Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m21
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    28   0.80 
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    28   1.1  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   1.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   3.2  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   7.5  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   7.5  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   9.9  

>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 315 FTPDETGSKFSLTLTERAEWQYSERE 392
           FT +E  SKF   LT+  +W Y E E
Sbjct: 601 FTNEEESSKFKEMLTKAEDWLYEEGE 626


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 479 TSIWTATNKETGYLVAPRRSGVEAFDVFFFTF*VLPLSAFCE 354
           TS W ATNK+    VAPR + VE+ DV   T    P + + E
Sbjct: 499 TSFW-ATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAE 539


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 400 FSFSRSEYCHSARSVSVKE-NFDPVSSGV-NAYVGSGGRNANLAAIFPGHGGQQNRQQSS 227
           + F+     +++ S+++ + N D +++G+ N   G+GGRN N   +  G  G  + Q  S
Sbjct: 7   WDFANISGSNTSGSLNLNQLNLDNINNGLHNQEDGAGGRNENSERVGSGSPGSVSMQVLS 66

Query: 226 L 224
           L
Sbjct: 67  L 67


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 352 VKENFDPVSSGVNAYVGSGGRNANL 278
           ++ENFD     V AYV SG  N +L
Sbjct: 74  LQENFDSFFPNVEAYVESGNSNGDL 98


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = -3

Query: 322 GVNAYVGSGGRNANLAAIFPGHGGQQNRQQS-SLKLNPFILFRYCL*TLVFTKHYPLQNY 146
           G+  Y GS  R      + P    +  R  + ++ LN  +LF  CL + V    Y  QN 
Sbjct: 454 GLVLYTGSETRIQKNRGLTPSKRSRITRDLNWTIILNFLLLFAMCLFSGVLRSIYSAQNN 513

Query: 145 ESQITDNGENKIHKTDRSSTISFLSAITLSKTL 47
            +++ +  +N  +       IS  +++ L + L
Sbjct: 514 SARVFELSKNS-NTAPAHGIISIFTSLILFQNL 545


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 142 SQITDNGENKIHKTDRSSTISFLSA 68
           SQ+ + GEN +  T+ SS I  LSA
Sbjct: 31  SQLHNGGENSVMDTEESSAIDKLSA 55


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 300 EPTYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYS 419
           +P+  +T D+    + +  +E+   QY  +++E    +YS
Sbjct: 39  KPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYS 78


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 177 YLLNTTHYKTMSHKSLIMAKIKFTK 103
           +L+N  HY    +K LI A ++F K
Sbjct: 141 FLINAPHYLNYMYKLLIEAGVEFEK 165


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 218 KFQRTLLPVLLSAMPRKNCGQVSISASRT 304
           K Q   LP+LLS  PR   GQ      +T
Sbjct: 139 KIQEKALPLLLSNPPRNMIGQSQSGTGKT 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,383
Number of Sequences: 5004
Number of extensions: 42366
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)