Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m09
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    32   0.088
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    31   0.15 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    29   0.62 
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   7.6  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    25   7.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.6  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 596 DFCYYWMHRACHEVHILWAQHQVHH 670
           DF  YW+HRA H   +    H++HH
Sbjct: 163 DFLIYWIHRALHHRWLYAPLHKLHH 187


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 488 WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHRACHEVHILWAQHQVH 667
           W  AE + Y+++Y N     L +    +     +  DF  YW HR  H  ++    H++H
Sbjct: 95  WFLAELHGYSYLYDNISDYGLKY-FLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKLH 153

Query: 668 H 670
           H
Sbjct: 154 H 154


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 623 PCASSNSRSRRQELPHTRSACCPRAAPLICSWCRSTCTSK 504
           PC     R  R E      AC  +A P+ C +C   C  K
Sbjct: 32  PCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRK 71


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 479 RIIWRGAESYLYTWIYTNYRLVELPWDST 565
           R IWRG   Y++  +YTN+ +V   W+ T
Sbjct: 9   RDIWRGKCIYVFRCLYTNHAVVS--WNQT 35


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 EKKDDVPNFFKQSWPYFFIFMIL 385
           EKK+ + NF++  W +F  F I+
Sbjct: 677 EKKESLKNFWESLWKFFTHFFIV 699


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 530 NYRLVELPWDSTLTWYAAALGVDFCYYW 613
           N R+ ELP DS  T   + +G   CY W
Sbjct: 439 NERIDELPEDSLRTQPLSLIGNGDCYSW 466


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +2

Query: 428 LNDGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFC 604
           L D +T++ H +      I   GAE   Y W Y ++   +  +   + W    L +  C
Sbjct: 218 LKDTLTTVIHDLVSLAPSIS-SGAEQVRYRWTYDSFPFTKPSFQLEIDWKGKWLEILGC 275


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 473  CGRIIWRGAESYLYTWIYTNYRL 541
            C RI +RG+  Y+    YT Y L
Sbjct: 1087 CDRICYRGSPDYISAENYTRYEL 1109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,697
Number of Sequences: 5004
Number of extensions: 56455
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)