Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25m09
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 39 0.004
02_04_0652 - 24742182-24742186,24742535-24742767,24742869-247430... 37 0.017
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920 36 0.039
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241... 32 0.37
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 29 3.4
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435... 29 3.4
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554... 28 7.9
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 28 7.9
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 28 7.9
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 551 PWDSTLTWYAAAL----GVDFCYYWMHRACHEVHILWAQHQVHH 670
PW ST A+ V+F YYW+HRA H H L+A++ HH
Sbjct: 121 PWWSTKGMVVTAVLHAGPVEFLYYWLHRALHH-HWLYARYHSHH 163
>02_04_0652 -
24742182-24742186,24742535-24742767,24742869-24743092,
24743343-24743402
Length = 173
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 593 VDFCYYWMHRACHEVHILWAQHQVHH 670
V+F YYW HRA H H L++++ HH
Sbjct: 138 VEFLYYWFHRALHH-HFLYSRYHSHH 162
>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
Length = 274
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 518 WIYTNYRLVELPWDSTLTWYAAAL-GVDFCYYWMHRACHEVHILWAQ-HQVHH 670
W + E+ W L + A L V+F YWMHR H++ L+ H HH
Sbjct: 114 WTQCYVNISEVGWPMYLVYLALYLIFVEFGIYWMHRELHDIKPLYKYLHTYHH 166
>11_08_0095 -
28323425-28323494,28323577-28323657,28323744-28324157,
28324236-28324381,28325911-28326048,28326192-28326224
Length = 293
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 596 DFCYYWMHRACHEVHILWAQHQVHH 670
DF +YW HRA H + H VHH
Sbjct: 121 DFIFYWGHRALHTKWLYKHVHSVHH 145
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 623 PCASSNSRSRRQELPHTRSACC 558
PC + RSR PH RS+CC
Sbjct: 397 PCCCGDRRSRAAGDPHGRSSCC 418
>02_01_0589 -
4355207-4355410,4355574-4355747,4356234-4356344,
4356506-4356712,4357609-4357716,4358442-4358698,
4359120-4359241,4359782-4360001,4360877-4361130,
4361782-4362015,4362143-4362189
Length = 645
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 605 YYWMHRACHEVHILWAQHQVHH 670
+YW HRA H + H HH
Sbjct: 148 FYWAHRALHRAPLFSRYHAAHH 169
>06_03_0962 +
26351861-26351899,26353304-26353530,26355183-26355421,
26356276-26356495,26358093-26358214,26358428-26358729,
26358776-26358883,26359314-26359376,26359415-26359621,
26359702-26359812,26359899-26360228
Length = 655
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 605 YYWMHRACHEVHILWAQHQVHHT 673
+YW HRA H + H +HH+
Sbjct: 138 FYWAHRALHLGPLFSRYHSLHHS 160
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 596 DFCYYWMHRACHEVHILWAQHQVH 667
D+ YW+HR +H WA H +H
Sbjct: 137 DYLGYWIHRL---LHTPWAYHHIH 157
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +2
Query: 407 EGKPGVRLNDGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTLTWYAAA 586
+G+PG R ++SI++ + C R++ E+ + N+ V+ P DS +
Sbjct: 44 DGEPGDRSIPQLSSIANSVVSRCSRVLALATET-----LQQNFE-VDYP-DSCKE--SNT 94
Query: 587 LGVDFCYYWMHRACHEV 637
+F Y H+A HEV
Sbjct: 95 YAKEFLEYCCHKALHEV 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,993,613
Number of Sequences: 37544
Number of extensions: 372328
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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