Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m09
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...   114   6e-26
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   2.3  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   2.3  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   2.3  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   9.3  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   9.3  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    27   9.3  
AC199169-12|ABO33253.1|  478|Caenorhabditis elegans Hypothetical...    27   9.3  
AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical...    27   9.3  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score =  114 bits (274), Expect = 6e-26
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
 Frame = +2

Query: 212 FANASVENGFSDFVTDHLKGVGRLFYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEH 391
           F+N S+ +   D +T  L  +   FY+ SP ++  E  DDVPN+  +   ++ +F+  E 
Sbjct: 11  FSNTSLGHRLLDRLT--LTNLRHAFYLISPYETTVESIDDVPNYNAEVSAWWLVFLTAEF 68

Query: 392 IVLRLEG-KPGVRLNDGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTL 568
            +L + G +    LND ITSI  G+  +C +   R    +LY  ++ N+R++ELPWDS  
Sbjct: 69  FILFISGHEDRFALNDSITSICAGMLSQCFKFGGRAVAIFLYVIVWDNWRILELPWDSPW 128

Query: 569 TWYAAALGVDFCYYWMHRACHEVHILWAQHQVHHTS 676
           TW       DF YY  HRA HE    W  H +HH+S
Sbjct: 129 TWIFCLFFQDFMYYLGHRAVHEAGFFWGLHTIHHSS 164


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 587 LGVDFCYYWMHRACHEVHILWAQ-HQVHH 670
           L  DF Y+W H   H+V  L+   H VHH
Sbjct: 139 LAFDFTYFWFHYINHKVKWLYRWCHSVHH 167


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 488 WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHR 622
           + G   Y+   IY  Y  +E  +DS + W+  ALGV  C+Y M R
Sbjct: 185 YSGTRPYMAPEIYATYLEIEDGYDSRVDWW--ALGV--CFYEMLR 225


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 430
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 430
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 430
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 549 CPGTAR*PGMRQLLASTSAITGCTGPAMRSIYY 647
           CPG+   PG  Q L  +  +TG   P     YY
Sbjct: 681 CPGSPTNPGACQGLPESEGVTGAPAPPTSRWYY 713


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 549  CPGTAR*PGMRQLLASTSAITGCTGPAMRSIYY 647
            CPG+   PG  Q L  +  +TG   P     YY
Sbjct: 1099 CPGSPTNPGACQGLPESEGVTGAPAPPTSRWYY 1131


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 434 DGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYW 613
           DG T +   ++    R++W  A S++   I T YR   +    +L+++     + FC Y 
Sbjct: 565 DGWTPVQTALYSCFSRVLWGFAMSWIV--ISTYYRKGLIRDFMSLSFWTPLARLSFCAYL 622

Query: 614 MH 619
           +H
Sbjct: 623 VH 624


>AC199169-12|ABO33253.1|  478|Caenorhabditis elegans Hypothetical
           protein F38A1.14 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 410 GKPGVRLNDGITSISHG-IFQECGRIIWRGAESYLYTWIYTNYRLVELP 553
           GKP    N G T +    IF++ G   W   ++   TW   +Y     P
Sbjct: 104 GKPVTYTNFGTTELDQNYIFEDMGTSRWGSYKNSSLTWFVCSYAATPAP 152


>AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.1 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 418 WLPFQPQDDVLQD---HEDEEIRP*LLEKVRHIIFLLKHRVLRGIYVEKSSNSLQM 260
           W+    Q   L+D   H+ ++IRP   +K       L  ++L+GIYV ++ ++LQM
Sbjct: 453 WIRQMHQQVHLEDDHVHDGDQIRPGTTDKDT---ISLGTKILKGIYVVRAIHALQM 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,596
Number of Sequences: 27780
Number of extensions: 326114
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)