Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m04
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    29   3.8  
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702...    28   5.0  
11_01_0615 + 4916377-4916739,4917301-4918086                           28   6.6  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   6.6  
01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395     27   8.7  

>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 155 TKGRYLFDKYKCLFQGYGCILIIKYMYVYNKNLTFISVI 271
           TKGR+   + +     YG I   K M   NKNLTF  VI
Sbjct: 374 TKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGVI 412


>01_01_0891 +
           7023383-7023700,7024627-7024705,7024888-7024951,
           7025324-7025401,7025513-7025708,7025895-7025963,
           7026115-7026254,7026425-7026547,7027390-7027582,
           7028872-7029034,7029433-7029476,7029683-7029724
          Length = 502

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2

Query: 515 SRRTNITLLAQLQVTRESN*IINMQFRKGHIFENINSSGNEKTRTKHTAV 366
           S+  +  L+  L  TRE+  ++  Q + GH+F N++ +G+  + T  TAV
Sbjct: 267 SQIVSTNLVGSLLCTREAMNVMQHQQKGGHVF-NMDGAGSGGSSTPLTAV 315


>11_01_0615 + 4916377-4916739,4917301-4918086
          Length = 382

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 137 VAGSNPTKGRYLFDKYK-CLFQGYGCILIIKYMYVYNKNLTFISVIWYL*HKFF 295
           VAGS    GRY FD +   +   + C ++  +  +Y       +V W + H++F
Sbjct: 209 VAGSPALSGRYAFDAFMYAVTVAFTCSMLATFSLIYAGT---AAVDWKIRHRYF 259


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 19   VRIYPPAPVECRRA*CRYHSGKIQRPSGVVV 111
            +R+YPPA V  R A      G I+ P G +V
Sbjct: 1353 LRLYPPASVMMREALTDVKLGSIEVPRGTIV 1383


>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
          Length = 262

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 216 NIHP*PWKRHLYLSNKYL 163
           N+H  PW++H Y+ +K+L
Sbjct: 203 NMHMGPWRKHKYMQSKWL 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,043
Number of Sequences: 37544
Number of extensions: 287175
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)