Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m03
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   127   1e-30
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    27   2.4  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  127 bits (307), Expect = 1e-30
 Identities = 67/142 (47%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
 Frame = +1

Query: 154 KITGTIVFTETSEGLHITGTI--TGLPAG-RYGFHVHALGD-TSTCDAAGPHFDPEGNNH 321
           K++G + F +  +   ++  +   G  A  + GFH+H  GD T+ C +AGPHF+PEG  H
Sbjct: 13  KVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTH 72

Query: 322 GGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLG 501
           G     VRHVGDLGN+    + +      F D +I+L G N+IIGRT+V+H  EDDLG G
Sbjct: 73  GDRTAAVRHVGDLGNLE--SDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKG 130

Query: 502 GHELSLTTGNAGPRVACGVIGI 567
             E SL TGNAG R ACGVIGI
Sbjct: 131 TSEESLKTGNAGARNACGVIGI 152


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 263 ETRALVTPPGHTSTLKATIMEAQITMYVTLVILEML 370
           +TR +  P GH+  L + ++E +  +YVT  +L  +
Sbjct: 50  KTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTI 85


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 189 RSFSKNNSTRNFSRY*MGYSNSVLTVGSACKYA*ENKNNNSHYRH 55
           R  + N+ST +F++Y  G SNS+ +  S       +K+N+S   H
Sbjct: 293 RGLTSNSSTGSFTKYTNGSSNSLYSNSSMQTPYLPSKSNSSTSLH 337


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 346 HVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNI 450
           HV D  +V F  +      V+FV+ + T+RG  ++
Sbjct: 338 HVNDRWDVAFAVSDGQFKQVSFVNNISTIRGGTHV 372


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 499 GGHELSL-TTGNAGPRVACGVIGIRSPVVW 585
           GG  L++ TTG   P +A  V+G+ SP ++
Sbjct: 479 GGKTLTIETTGANNPMLAGNVVGLLSPALY 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,306
Number of Sequences: 5004
Number of extensions: 55560
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)