Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25l07
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    32   0.074
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      29   0.69 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    29   0.69 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   1.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.1  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   2.1  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    27   2.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   2.8  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   6.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   6.4  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   6.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.5  

>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +1

Query: 514 AMDDHINRSIFKDKKLNMLWSKAEFSGFTAEELSALKEEFLHHQEKIDQYYELLGELDNG 693
           A+ +    S+ + +K  ++  + E   F   + S ++++ + +QEK D YY +  ELD  
Sbjct: 67  AIKEFKKTSLRRREKFRLMQLEKELGSFNDMDSSTIEDQ-IRNQEKKDPYYYIRKELDVL 125

Query: 694 KKDGYKNVV 720
           K   ++NVV
Sbjct: 126 KVLDHENVV 134


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 91  YLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNL 270
           Y+H+V   N    + +F  L+ SG  C N +T+ A    +     F+T+        +N+
Sbjct: 27  YVHEVMESNPSTNLILFPELITSGYECGNTFTQIAEIAGEGP--SFKTMSNLAAKYHVNI 84

Query: 271 LW 276
           ++
Sbjct: 85  IY 86


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 598  TAEELSALKEEFLHHQEKIDQYYELLGELDNGKKDGYKN 714
            TAEEL     EF  +++++DQ+Y ++    + ++  Y +
Sbjct: 1440 TAEELERKFREFCSNKDELDQFYGIVNHASDDRRSIYSS 1478


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +1

Query: 193 ANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRF 372
           + +K    K    T  +   +NK   +WT+    +T+ +  S Y  L    ++ +  K F
Sbjct: 245 SEKKEKKTKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHF 304

Query: 373 KSDG 384
             +G
Sbjct: 305 SVEG 308


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 28/110 (25%), Positives = 47/110 (42%)
 Frame = +1

Query: 313  KSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQK 492
            KS Y    +HD      K  +    D E ++E  L   L +I++V+   +H       + 
Sbjct: 1371 KSTYFMEGIHDVIVGLLKGIQCQQSD-ESIRE-NLYGSLLSILTVFQ--KHTSANGGDKV 1426

Query: 493  DHPAFNSAMDDHINRSIFKDKKLNMLWSKAEFSGFTAEELSALKEEFLHH 642
            D P F  A    I  ++   +  ++L   A ++  +  ELS +   FLHH
Sbjct: 1427 D-PVFKDAFQKLITPNLLTSQFFDVLTKDALYTNGSCWELSVIILNFLHH 1475


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +1

Query: 61  INSKVYINIKYLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLE 240
           I S +   ++ L K+  + ++ +    + LLM+ +VC   Y R   +++ +A V  + L+
Sbjct: 370 IPSTLSFFLEILTKLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQEHHNAIV--QALQ 427

Query: 241 KPFRMNKLNL 270
             F + KLN+
Sbjct: 428 NLFTLIKLNI 437


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 277 TKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNI 438
           TK +    +   K L++ L L   E    K+ +SD    +G K  +  +KLS++
Sbjct: 637 TKLKSTCAKASRKRLFNQLELSPPESFMEKKARSDENQLDGNKIKDDNQKLSSV 690


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +1

Query: 175 NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHD 345
           NK  R  N +ND A          F +N LNL WT       E   + L    +LHD
Sbjct: 253 NKNIRQKNTENDAAG---------FTINDLNLAWTIEPHAFVEQYPQKLRMPFLLHD 300


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
 Frame = +1

Query: 442 SVYGLLEHFDPKADRQKDHPAFNSAMDDHINRSIFKDKKLNMLWSKAEFSGFTAEELSAL 621
           S+ GL   + P       +P+F    DD   R  ++++   ++W+ ++ +    E + A 
Sbjct: 290 SILGLSIDYGPFGFLDVYNPSFTPNHDDVFLRYSYRNQPDIIIWNLSKLASALVELIGAC 349

Query: 622 -KEEFLHHQEKIDQYYELL-------GELDNGKKDGYKNVVNDD 729
            K + L + E++    +LL        E+     + YKN+V +D
Sbjct: 350 DKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKIVEEYKNIVQND 393


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +1

Query: 307 KLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADR 486
           KLK++     + D++ +   R K    DKE L+  +L  + S I  V    +H    +  
Sbjct: 507 KLKTMKDGKAVVDEKAVLSDRSKKIKVDKEALESYKLNSEQSGIYRVNYSADHLKKLSQI 566

Query: 487 QKDHPAFNSAMD 522
             + P + S  D
Sbjct: 567 AVEKPDYLSVED 578


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
 Frame = +1

Query: 250  RMNKLNLLWTKAQQRLTE-PKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRK 426
            ++ KLN L  K Q   +E  KL++   DL     +   + R + +   K+   E  L  +
Sbjct: 678  QIQKLNSLQLKLQVVTSEYEKLETQLKDLKT---QNANFHRLEQEIQLKQ--HELTLLIE 732

Query: 427  LSNIMSVYGLLEHFDPKADRQKDHPAFNSAMDDHINRSIFKDKKLNMLWSKAEFSGFTAE 606
                 S + LL  +    D  KD       +D  I +S    KK+       E+      
Sbjct: 733  QRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQSDQAIKKIER--DMQEWKHNKGS 790

Query: 607  ELSALKEEFLHHQEKIDQYYELLGELDN 690
            +++ L++EF  ++ K+D++  +L + +N
Sbjct: 791  KMAELEKEFNQYKHKLDEFTPILEKSEN 818


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 499 PAFNSAMDDHINR--SIFKDKKLNMLWSKAEF 588
           PAF+    + +     +F+D K N++W  AEF
Sbjct: 193 PAFDLVATEDVTTVTDLFQDWKNNLIWESAEF 224


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/93 (22%), Positives = 44/93 (47%)
 Frame = +1

Query: 199 EKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKS 378
           E ++++K+  R +EK  ++  L+L  +      +  K+ +  S  + H K + + K+ + 
Sbjct: 249 ELSNESKLAIRCIEKNLKLILLHLAKSTGASSSSVEKIHAYLSGQIYHTKVDESLKKRQY 308

Query: 379 DGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPK 477
           +G     +  A  R K S + S   L+E   P+
Sbjct: 309 EG----NISAASKRVKSSAVQS---LVERMQPQ 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,217
Number of Sequences: 5004
Number of extensions: 51299
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)