Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25l04
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    82   3e-17
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   0.76 
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     25   4.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   5.4  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    24   9.4  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    24   9.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   9.4  

>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 37/94 (39%), Positives = 61/94 (64%)
 Frame = +2

Query: 2   IIGGLVDHNQYKGVCHNISVEQGIRHGRLPLDKYINMKTRKVLTIDHVFEIMLKISEGLT 181
           IIG +VD N+YK +C N + EQGI+  +LP+D+YI +  RK+LT++ VFEI+    E   
Sbjct: 201 IIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRD 260

Query: 182 WQETLIRVLPVRKGAHICNASNSNLSLDSENAVN 283
           W++  + V+P RKG  + +  + ++S D+ +  N
Sbjct: 261 WEKAFMEVIPKRKGILLKSDESFDVSEDTRSQSN 294


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 129 KTFLVFMLIYLSKGKRPCLIPCSTDIL 49
           KTF  F    L  G RPC  P + DIL
Sbjct: 751 KTFNEFFYRKLKPGSRPCAFPDNPDIL 777


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 330 IMNFYYLFTQFSTHIEFTAFSESKLKF 250
           IMN Y+ F Q+ST++E   F+ +  K+
Sbjct: 74  IMNIYF-FYQYSTYLENFVFARNAKKY 99


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 137 LLLKPFSFSC*YIYLKVNGHALFLVPQIYYDKHPYIDY 24
           LLL P  F+  +IY  +  H+L  +P I+     Y+ +
Sbjct: 64  LLLIPALFTLIWIYKYIEPHSLISIPGIFVFLGLYVPF 101


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 188 ETLIRVLPVRKGAHICNA----SNSNLSLDSENAVN 283
           E   +VLPV   + + N     SNSN+SL   +A+N
Sbjct: 40  ENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHALN 75


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 246 LLALQM*APFRTGRTLIRVSCHVS 175
           ++A +M APF   R L++  CHV+
Sbjct: 81  VIARKMRAPFAQERCLLKDICHVN 104


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 138 IMFLKLCSR---YLKD*HGRRP**GSSRYEKELTFVT 239
           + FLKLC+R   Y +D H +     S++  +EL  VT
Sbjct: 770 VYFLKLCTRIISYFQDLHPKEGRLKSAKQVEELCLVT 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,613
Number of Sequences: 5004
Number of extensions: 23157
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)