Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25l02
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    36   0.004
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.1  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    25   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.1  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +3

Query: 78  ACVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 221
           ACV C++ G MTKDL +    L+ +  G ++ T +FL+A+  +L+ +L
Sbjct: 372 ACVRCVEKGIMTKDLYL----LSKSPNG-YVDTFEFLDAVKSELDSEL 414


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 148 TRKKVCFYTPKIXXXXXXXXXXXXXXXXKNTQSPINNTP*LNIGTQAEILLLHPPNYVYL 327
           ++KKV F+ PK                 +N +S +++        Q ++L +H PNY+  
Sbjct: 191 SQKKVGFFKPK-SNAQLTKLEDEARLKAENAESDMHSKIENAQNVQKQLLCIHRPNYIKQ 249

Query: 328 FFTL 339
           FF+L
Sbjct: 250 FFSL 253


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 172  CKNIPSFVFANPCIQITKSFVIL 104
            C ++ S + +N C+ I +SF++L
Sbjct: 1227 CSDMVSNILSNECLPIKESFIVL 1249


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 258 HPVAEHWYPGRDSVVASPELCIPFFYA 338
           H  +  ++ G     A P++C P F A
Sbjct: 154 HLASNEYFAGEQFTAADPQMCFPIFAA 180


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 6    NLCFEMSNIIR-IADVNCCYVFGTQACVECIDS-GKMTKDLVICIHGLANTKEGMFLHTE 179
            NLC   S I++ I D+    V   Q C++C+ S  +    L IC HG+      ++ + E
Sbjct: 3272 NLCESASIIVQFITDLT---VGEFQLCLKCLLSFSQHAASLRIC-HGIDAMLLNIYHYFE 3327

Query: 180  DFLEAIAEQL 209
             FL  ++E +
Sbjct: 3328 QFLSKVSEAI 3337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,536
Number of Sequences: 5004
Number of extensions: 48503
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)