Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25l02
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...    54   7e-08
Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    29   3.8  
U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    28   6.6  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    28   6.6  
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = +3

Query: 75  QACVECIDSGKMTKDLVICIHGL-ANTKEGMFLHTEDFLEAI 197
           +AC++ ++ GKMTKDL ICIHG    T++G +L TEDFL AI
Sbjct: 383 KACIDTVEEGKMTKDLSICIHGTKKGTEKGAYLITEDFLSAI 424


>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
 Frame = +3

Query: 81  CVECIDSGKMTKDLVICIHG--LANTKEGMFLHTEDFLEAIAEQLERK 218
           C+E +++G +TKDL IC+ G   +      +L+T +FL+ +AE L +K
Sbjct: 362 CIETMEAGFLTKDLAICVKGGNASAVTRTDYLNTFEFLDKLAENLAKK 409


>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 305 IPRIMYTFFLRSYCSALFFFFLPKLIVLRGYFSVTLTSR*AHGAQTGVMLT 457
           IP I  TFF  S C    F  + KLI  R    +++ S+ +H A+  + LT
Sbjct: 203 IPLIFTTFFWFSACLITNFVLIFKLIRHRFTVDLSMRSQKSHKAEISLTLT 253


>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 611 HCVPCLFILIFF 646
           HC+PCLF++I F
Sbjct: 210 HCIPCLFLMIVF 221


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 611 HCVPCLFILIFF 646
           HC+PCLF++I F
Sbjct: 210 HCIPCLFLMIVF 221


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 357 NRAEQYERKKKVYIIRGMQQQNLGLGTNVQLRGVVYR 247
           N  + +   +K+Y I  M+Q NL   T+ +  GVV++
Sbjct: 133 NGRDGFNVPEKIYCILDMEQGNLSFATDNEYLGVVFQ 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,612
Number of Sequences: 27780
Number of extensions: 280414
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)