Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25l01
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    27   1.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   1.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   2.9  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.7  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -3

Query: 617 TYHKT---YTNNYGNVDNK*ETKGNYTNRHNKVYKKKKHCMNIENKKQHK 477
           ++H+T   +T+NY  VDN  +T  N+  +  +  ++++  +NI  + +H+
Sbjct: 174 SHHRTSQLHTDNYKQVDNVRQTLANFAYKEYESEERRRTVLNI-RRAEHE 222


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +3

Query: 504 HTMFFFFIYLIMSICI--IPLCLLFIV 578
           +T+FFF++ ++MSI I  +P   LFIV
Sbjct: 256 NTLFFFYLPIVMSILIFCLPTQALFIV 282


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 530 VYKKKKHCMNIENKKQHKIIIRTLK*SCSATFACSVEKNM 411
           ++K   H  N  N K   ++ + L+ S S  F C   +NM
Sbjct: 783 LFKAHDHWNNTSNLKDSAVLFKVLQTSRSMAFTCQEIENM 822


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 460 NVLI-IILCCFLFSMFIQCFFFLYTLL 537
           N++I +I    LF+ F  C +FL+T L
Sbjct: 31  NIIINLIPLVLLFAFFCPCIYFLHTFL 57


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 473 LFCAVFYFLCSYNVFFFYIPYYVDLY---NSPLSLIYCRRCHNC*CMFYDT 616
           L C+ F++L +Y +F +Y+P Y       N  +S ++   C    C F  T
Sbjct: 362 LACSSFFYL-NYMLFAYYVPQYFQRIRGDNPIMSGVHTIPCAAVLCFFCTT 411


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 493 FSMFIQCFFFLYTLLC 540
           FS++I  +FF Y+ LC
Sbjct: 77  FSIYIYIYFFFYSFLC 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,792
Number of Sequences: 5004
Number of extensions: 40892
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)