Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25k12
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -3

Query: 647 YKYKENQLQLHTLMQYYQNHLVCQHQPLHLTETSQPHGALQLQPDVEQ 504
           +K  E Q Q    MQ  Q H   Q Q  H+    QP    Q Q   +Q
Sbjct: 409 FKMTEQQQQ----MQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQ 452


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 575 HQPLHLTETSQPHGALQLQPDVEQ 504
           HQ LH  +++ P    Q QP  +Q
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQ 834


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = +2

Query: 236 VQCTALTNLQRGNTQARVPELPQPDYSLHAKAGRGEITRDDLKLEQYVDITDEHGLTALH 415
           ++ T   N    +   +V EL Q     HAK  +    ++       +D+ D    T+L 
Sbjct: 527 IEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMDIDVCDNQTYTSLQ 586

Query: 416 WA 421
            A
Sbjct: 587 MA 588


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +2

Query: 71  KNIDIKQEKQDNVDSFK 121
           ++I++ QEK++NV++ K
Sbjct: 3   RSINMDQEKKNNVENLK 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,360
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)