Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25k09
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    28   0.11 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 461 INVWIILTNVLLIMSVQQTEQSGSILSLMLKEYVRNSMMQALKTPP 598
           +NV ++L NVL+I++V  T +  ++ ++ +       +M  L   P
Sbjct: 75  VNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLP 120


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 651 IKSTQQQNDTTDPLGQSVRYLCEYIYYTSLS 743
           +KS + + D T P G  +     Y  YT+++
Sbjct: 750 VKSLRLEGDETPPYGMELTEAEHYALYTAMA 780


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 343 VDEFVPALWETHTPKLMIHVGVSS 414
           +D   P LW+    K ++++G+ S
Sbjct: 347 MDSGGPVLWQNPRTKRLVNIGIIS 370


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 356 TNSSTFS*VTGISIKTSSHLCLFSISCLSKSFTA 255
           +N  T     G  +   +H+C FS+  L  +FT+
Sbjct: 373 SNEETIDINNGAELMQETHVCFFSL--LRDAFTS 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,600
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)