Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25k08
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   2.9  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    23   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   6.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   8.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   8.9  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    23   8.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   8.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    23   8.9  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 28  ISNFKVVEFCYFYF*YCVTLFELNVFENSDVPTTVKF 138
           I  F   E   F F +CV     N  ENSD    VKF
Sbjct: 402 IMKFSDSELHTFLF-HCVNKIVANTTENSDSAEAVKF 437


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 37  FKVVEFCYFYF*YCVTLFELNVFENS 114
           F  + +C F F  C+T+ EL+   NS
Sbjct: 179 FGKLRYCAFPFSRCLTVEELHTLMNS 204


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 98   MYSRIQTFLQPSNFILQERSLYE 166
            MY +++ FL+P+N  +Q R++ E
Sbjct: 957  MYEKLRGFLKPTNLTIQ-RNIIE 978


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 25  HISNFKVVEFCYFYF*YCVTLFELNVFENSDVP 123
           H   F  V  C+    YC  LFE N  E S++P
Sbjct: 725 HRGAFTSVYPCFIE--YCSFLFECNKHEISELP 755


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 22   FHISNFKVVEFCYFY 66
            FH+  FK  +F YF+
Sbjct: 1393 FHLKKFKPTDFDYFF 1407


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  FELNVFENSDVPTTVKFHITRTVTV 162
           F  ++F  +     VKFH+ RTV +
Sbjct: 89  FGSSIFSGAVPEVMVKFHVCRTVAL 113


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  VTLFELNVFENSDVPTTVKFH 141
           + LF+L++FE  ++P    F+
Sbjct: 645 LALFDLSLFEKHNIPAPTNFN 665


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 101 YSRIQTFLQPSNFILQERSLYE 166
           +S + T + P+N + QE +LYE
Sbjct: 54  FSSLTTPIVPTNGVAQEPTLYE 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,095
Number of Sequences: 5004
Number of extensions: 8587
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)