Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25k03
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 31 0.20
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.82
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.82
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos... 28 1.1
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 1.1
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 28 1.4
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 28 1.4
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 1.9
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 1.9
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 27 1.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 3.3
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 4.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.8
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 5.8
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 25 7.6
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +2
Query: 416 RKLVEDFEFGFREPEKIKYGRATLRQVVTFISAHQIDSKEASPDKIAFEYKLKLEDVESI 595
+ V EFG +PE+++ + + + S H I + + I EYK+ + + +
Sbjct: 806 KSAVNSVEFGNSKPERVEKFVSVISAGLAGSSTHMISATIIAISSIVMEYKVFISE-PFL 864
Query: 596 LKYFKTFEIYIPETKKTPAMFA 661
++ T ++I +K+ A A
Sbjct: 865 VQLISTLNLFITSSKREIAKAA 886
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 89 LLNELKPSEMGALVAKALRPVKAFNIENRAHRVISKEKPTPAP 217
L+N P + + +LRP+++ N ++RV S + P P P
Sbjct: 377 LMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQAPPPHP 419
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 0.82
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 3/147 (2%)
Frame = +2
Query: 98 ELKPSEMGALVAKALRPVKAFNIENRAHRVISKEKPTPAPRY---PGNIEDLKRTLEADP 268
E+ P M L K RP K+ NI + + + P P + ++ + P
Sbjct: 475 EVSPDGMTLLPRKRGRPRKSANISVTSSPIRPSKNENNLPSLAISPVSEGFIQNATISTP 534
Query: 269 NIDEKLDKKDPALDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRPLPQDRKLVEDFEFGF 448
+ L + +Y + + KK + PL V F
Sbjct: 535 STSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDHVKKAEHLEPLLNVSSSVPSKNFTV 594
Query: 449 REPEKIKYGRATLRQVVTFISAHQIDS 529
P+ +KYG + QV S+ +DS
Sbjct: 595 SSPDHLKYGNTSSLQVSDSQSSIDLDS 621
>SPBC31F10.09c |nut2|med10|mediator complex subunit
Med10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 28.3 bits (60), Expect = 1.1
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +2
Query: 113 EMGALVAKALRPVKAFNIENRAHRVISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDK 292
EM +L ++ +AF + A V + E TP+ P +++ L R L++ P+I K++
Sbjct: 4 EMKSLASRLEDTTQAFY--DLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNN 61
Query: 293 KDPALDDRLKDVYVTSYGRSEDDVTRELRK-KQSEVRPLPQDRKLVEDFEFGFREPEKIK 469
P D L+ Y+ GR+ D R+ + Q + + + +E F+ F E K
Sbjct: 62 LIP--QDVLE--YI-EQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIKQA 116
Query: 470 Y 472
Y
Sbjct: 117 Y 117
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/137 (19%), Positives = 57/137 (41%)
Frame = +2
Query: 146 PVKAFNIENRAHRVISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKD 325
P+K ++E +I+ + P P+P D++ +P K + + A + K
Sbjct: 124 PLKETSLELSEEEIITSKSPIPSPETIHKNIDVEEKETIEPTTPVK-EVETTAHAEEEKG 182
Query: 326 VYVTSYGRSEDDVTRELRKKQSEVRPLPQDRKLVEDFEFGFREPEKIKYGRATLRQVVTF 505
+ +T EL K S+ + + ++VE E E + T+ + V
Sbjct: 183 PLTPDSEYAARQLTEELANKSSQEEGVDKQLRVVEATEKEHEEDGNEE--NVTVTKPVE- 239
Query: 506 ISAHQIDSKEASPDKIA 556
++ Q++SKE +++
Sbjct: 240 VATDQVESKEVKKKEVS 256
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 176 AHRVISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKK 295
A I K P P + N D + TLE P+I+ K ++K
Sbjct: 48 ADDTIDKMNVGPHPSHSENASDSETTLEVSPDINPKKNEK 87
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 428 RLISGPEAKALPRFVFF-VVPA*RHLQTDRKMLHKHPSVY 312
R++ P L F+FF ++LQT+ K LH+ S+Y
Sbjct: 317 RIVDEPSFSVLNSFIFFNQADIIQYLQTNEKFLHELFSIY 356
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 353 EDDVTRELRKKQSEVRPLPQDRKLVEDFEF 442
E D ++ +KK E+R D K VE++EF
Sbjct: 134 ESDDKKKRKKKVKEIRATRLDDKTVEEYEF 163
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +2
Query: 161 NIENRAHRVISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTS 340
N+ N + I+ P P E L E + +ID+ DK ++ D+ V
Sbjct: 205 NVPNLVNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSVLE 264
Query: 341 YGRSEDDVTRELRKKQSE 394
++D EL ++ E
Sbjct: 265 EDDDDEDEDEELEGEKEE 282
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 377 RKKQSEVRPLPQDRKLVEDFEFGFREPEKIKYGRATLRQVVTFISAHQIDSKEASP 544
R + E LP+D + + F P IKYG A +RQ++ +D EASP
Sbjct: 439 RPEMLEPMGLPKDVRCL-GFGLSLERPTMIKYGVADIRQLIG--PKVNLDLIEASP 491
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +2
Query: 188 ISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSYGRSEDDVT 367
+SK K + + P ++K T + ++E K+D D+ K+ VT R + V
Sbjct: 435 VSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDE--DNHQKEETVTQPKREKTPVE 492
Query: 368 RELRKKQSEVRPLPQDRK 421
+ K S +D K
Sbjct: 493 KSFPKPASSPVTFSEDVK 510
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.4
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Frame = +2
Query: 233 IEDLKRTLEADPNIDEKLDK-KDPALDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRPLP 409
IED ++ +EK+D ++ +DD +++V E E RKKQ E L
Sbjct: 413 IEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKE---LQ 469
Query: 410 QDRKLVEDFEFGFREPEKIKYGRATLRQVVTFISAHQIDSKEASPDK-IAFEYKLKLEDV 586
++ + ++ E +P ++ R + + + Q D+ E P++ + K E+
Sbjct: 470 EELEFPDEVEL---QPNELARERFKKYRGLRSLYTSQWDADEYDPNEPREWRQLFKFENY 526
Query: 587 ESILKYFKTFEIYIPETKKTPAMF 658
++ F + +I E K A++
Sbjct: 527 RNLKNKFLK-QPFIGEAKPGKAVY 549
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 443 QIQNLRLISGPEAKALPRFVFFVVPA*RHLQTDRKMLH 330
Q NL I + AL F+ F+VP+ + LQ + +LH
Sbjct: 315 QFPNLDFIL--KTTALVLFIIFLVPSFKKLQNEESILH 350
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 236 EDLKRTLEADPNIDEKLDKKDPA 304
E+L RT++ P I +KL +KD A
Sbjct: 298 EELLRTIDKAPAISKKLQQKDKA 320
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +2
Query: 308 DDRLKDVYVTSYGRSEDDVTRELRKKQSEVRPLPQDRKLVEDFEFGFREPEKIKYGRATL 487
+D LKD+ + S ++ + + EV+P+ QDR+ + E ++ L
Sbjct: 113 EDNLKDLELPKDEASSEE--QSFSSSKEEVKPIVQDRETKSNVEHKSTSQANDAVNKSFL 170
Query: 488 RQVVTFISAHQIDSKEASP 544
V I ++I++ + P
Sbjct: 171 PSVSYLIHQYKIENPWSIP 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,326
Number of Sequences: 5004
Number of extensions: 45348
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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