Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25k03
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0715 + 10621789-10623243,10624074-10625018 32 0.49
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 30 2.0
09_01_0170 - 2459344-2459493,2459720-2459784,2459905-2459963,246... 29 2.6
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 29 2.6
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 4.5
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 28 6.0
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 6.0
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 28 6.0
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 194 KEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPALDD--RLKDVYVTSYGRSEDDVT 367
+E TP PR P + R +ADP + +K DD +D V YG ++
Sbjct: 72 EEDETPRPRQPVKSRENGRKGKADPPVARSRRRKYEDDDDYSEEEDDRVDEYGEDLEEEE 131
Query: 368 RELRKKQSEVRPLPQDRKL 424
+L +++ E P+ +++
Sbjct: 132 EDLEEEEEEDDEAPRSKRM 150
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 128 VAKALRPVKAFNIENRAHRVISKEKPTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPAL 307
+A AL + A + + H +++E + + LKR LEA + LD + L
Sbjct: 92 LASALLTINAKDDLVKQHTKVAEEAVAGWEQAEAEVSTLKRLLEASTQKNASLDDQVNHL 151
Query: 308 DDRLKD 325
DD LK+
Sbjct: 152 DDALKE 157
>09_01_0170 -
2459344-2459493,2459720-2459784,2459905-2459963,
2460441-2460487,2460793-2460894,2461810-2461935,
2462035-2462169,2463396-2463512,2463583-2463714
Length = 310
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 227 GNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSYGRSEDDVTRELRKKQSEV 397
G+I+ + A+P++D L+ K+P L D+L D+ V + D LRK S +
Sbjct: 86 GHIDIVVSNAAANPSVDNILEMKEPIL-DKLWDINVKASILLLQDAAAYLRKGSSVI 141
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 203 PTPAPRYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRL 319
P P P +E ++ LE + EKLDK+ + D L
Sbjct: 467 PPPPPPAFSELEAIRAVLEESEKVQEKLDKQHAGMRDEL 505
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 119 GALVAKALRPVKAFNIENRAHRVISKEKPTPAPRYPGNIE 238
G LV PV+A+++E+R + I ++ PR P +E
Sbjct: 207 GTLVEAVFVPVEAYHLEDRLGKRIPHDQRFAVPRIPALVE 246
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 221 YPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVY 331
+ G + D RT DP IDE L K + A K VY
Sbjct: 242 FVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVY 278
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 257 EADPNIDEKLDKKDPALDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRPLPQDRKLVEDF 436
E+D + D + D+K +LK + RS+D+ +EL K++ E DR+ +
Sbjct: 610 ESDVSSDSREDRKSAR---QLKHDELERKKRSQDEKRKELEKQKQEEERKELDRQKQREE 666
Query: 437 EFGFREPEKIK 469
E +E EK K
Sbjct: 667 ERKAKELEKQK 677
>01_05_0110 + 18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 218 RYPGNIEDLKRTLEADPNIDEKLDKKDPA-LDDRLKDV 328
++PG+I+ T + D +DE LDK+ P DD DV
Sbjct: 905 KHPGDIQSSITTSKYDDFLDEILDKRLPVPADDEADDV 942
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,501
Number of Sequences: 37544
Number of extensions: 251543
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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