Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25k03
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   3.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 600 NILKLLKFIYLKPRKLQQCLQDQLI 674
           NILK LK  Y+K  KL++ ++  ++
Sbjct: 342 NILKFLKQKYVKNSKLEKVIKHDIL 366


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 218 RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 343
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 218 RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 343
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 218 RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 343
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 243 KSSIFPGYLGAGVGFSFEITR*ALFSMLKALTGLNAFATKAPIS 112
           K+ IF  Y     GF+       +F+++ +LTG+ A  T A I+
Sbjct: 100 KTPIFI-YNSFNTGFALGNLGCQIFAVIGSLTGIGAAITNAAIA 142


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 KALRPVKAFNIENRAHRVISKEKPTPA 214
           K L P+K+  I+      ISK+K +PA
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPA 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,152
Number of Sequences: 438
Number of extensions: 3280
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)