Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25j08
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    37   0.002
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   3.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.7  

>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 172 NDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVL 351
           N +  A R ++RI  +  +   +R  R+YEKP + R RV  E+ +A +   + R +    
Sbjct: 55  NSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNLAK 114

Query: 352 RKNR 363
              R
Sbjct: 115 NMRR 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 169 FVQTLCEL*KKDVYLIIGAATDAFYSDWIKKFQTFNS 59
           F+ T C++ + D+ +I       FY +WI K +  N+
Sbjct: 267 FIDTACKVWRVDMTMIAYETNRNFYMEWIHKKRIINT 303


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 368 SCLFFLNTNCIFLSISSL*MALHFSWLTRRLV*NGFS*YLVSLY 237
           +C +  N +  FLS+  +   +++ +L R    NG S + + LY
Sbjct: 51  ACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLY 94


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 475 HVFQLLSRSIPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVF 335
           H+  LLS + PI+   +    LFTF++     LE +H Y+  I  +F
Sbjct: 182 HIKTLLSDNSPIVVPAA----LFTFEVVCPEKLEIIHPYYHRICTLF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,299
Number of Sequences: 5004
Number of extensions: 59184
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)