Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25j06
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   0.80 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   3.2  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   7.5  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   9.9  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   9.9  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.9  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 464 LQKNFFFRICYIFSSMFEYRILSGRCYRC 378
           ++++  F  CY+FSS F Y+  S R Y C
Sbjct: 143 IKQDLPFAFCYLFSSYFSYK--SSRQYTC 169


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 488 LITFFVSFLQKNFFFRICYIFSS 420
           LI+FF  F+Q +  F+  Y+F+S
Sbjct: 421 LISFFTPFIQASIGFKYGYVFAS 443


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 488 LITFFVSFLQKNFFFRICYIFSS 420
           LITFF  F+  +  F+  YIF++
Sbjct: 417 LITFFTPFISDSIGFKYGYIFAA 439


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  NKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSM 181
           N+  L   +CF H+  +S+G  ++  R+       + W   P+D S+
Sbjct: 195 NREALICSHCFHHNGLASYGEKASDVRYVCLF--CKAWNGPPIDKSL 239


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 488 LITFFVSFLQKNFFFRICYIFSS 420
           LI+FF  F+  +  F+  YIF+S
Sbjct: 417 LISFFTPFITNSIGFKYGYIFAS 439


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 488 LITFFVSFLQKNFFFRICYIFSS 420
           LI+FF  F+  +  F+  YIF+S
Sbjct: 387 LISFFTPFITNSIGFKYGYIFAS 409


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 406 RYSNILENI*QIRKKKFFWRKLTKNV 483
           RY+N      ++ KK+FFWRK   +V
Sbjct: 579 RYANGSPICSEMGKKEFFWRKKATSV 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,106
Number of Sequences: 5004
Number of extensions: 42632
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)