Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25i24
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.48 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.64 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 401 DYLYLKENLKNVLPYSYYFY 460
           D  +  E + NVL + YYFY
Sbjct: 13  DRFFFIEGMTNVLDFDYYFY 32


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 632 IDESLPKLDPTETHTFFLQTSHHDVFCVCTHSRATD 525
           +DESL  + P + + F L+ + H+V  +  H +  D
Sbjct: 434 LDESLSDVTPRKKYPFELEKALHNVMFIQHHIQRQD 469


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 440 GVHSLGSPLNIGNLFHSKLLANILYYV 360
           G++ +       NL++S LL++ LYYV
Sbjct: 255 GIYGIALSPVTNNLYYSPLLSHGLYYV 281


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 434 VLPYSYYFYSGVLGSGLCVFSK-WVIQDVF-FHQWPLNG 544
           ++ Y Y+ Y G+L  G+ +  K   +Q ++ F ++ +NG
Sbjct: 122 LIAYIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNG 160


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 532 PLMEEDILDYPFRKYTE 482
           P   EDI DY FR  TE
Sbjct: 364 PSEGEDISDYKFRHITE 380


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 422 SPLNIGNLFHSKLLANILYYV 360
           SP+   NL++S L ++ LYYV
Sbjct: 260 SPVT-NNLYYSPLTSHSLYYV 279


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 422 SPLNIGNLFHSKLLANILYYV 360
           SP+   NL++S L +  LYYV
Sbjct: 260 SPMT-NNLYYSPLSSRSLYYV 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,486
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)