Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25i22
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.068
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.36 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +2

Query: 257 GCLKEARNGEACVQNIQCHMTMGVHSECTGGSCACAPTAHLDGERCYETAL 409
           G +K+ +    C    QC     VH E T   C      H D   CY+ A+
Sbjct: 456 GMIKKQQGDTCCWVCDQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAI 506


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +2

Query: 257 GCLKEARNGEACVQNIQCHMTMGVHSECTGGSCACAPTAHLDGERCYETAL 409
           G +K+ +    C    QC     V+ E T   C      H D   CY+ A+
Sbjct: 546 GMIKKQQGDTCCWVCDQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAI 596


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 512 TAIDMYSNLVRRMLVFRCLARRGSSSDRP 426
           T +DMY+N++  M +   L  +  + DRP
Sbjct: 644 TRVDMYANMIETMELTSLLLTK-VAEDRP 671


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 461 CLARRGSSSDRPHIFHQLMQSRNIV 387
           CL      S+   +FHQL+Q+   V
Sbjct: 12  CLRWNNYQSNMTSVFHQLLQTEAFV 36


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 206 SNCSVCRKRYPDSPCRRCKRYRSVVSR 126
           S CS+C++R+ +     C +   + +R
Sbjct: 272 SKCSLCQRRFEEQGNYSCLKVDLIFTR 298


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 220 RVRVCSYQQH*QRMPQRGPQRGGVCPKH 303
           R+ + ++Q+  +  P   P+R   CP H
Sbjct: 323 RIVLLNFQEERRSEPVEPPRRKNNCPLH 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,617
Number of Sequences: 438
Number of extensions: 4818
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)