Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25i06
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           35   0.005
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    30   0.15 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    29   0.27 
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    27   1.4  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   2.5  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   3.3  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.4  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   4.4  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   4.4  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    25   5.8  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   7.7  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 34.7 bits (76), Expect = 0.005
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 DFDQWISDYNDIHNIQSALQK-HRQKENTQFTTTVENKRLQIILNNDIALILYRTKNRNH 307
           ++D  +    DIH++ S  +K + +KEN +  T ++    ++ LN  I  I  R K   H
Sbjct: 23  EYDSHVDSIEDIHSLASKRKKLNEKKENLEDLTLLKTSAFELKLNELIREISVRGKYFRH 82

Query: 308 INT 316
            NT
Sbjct: 83  ANT 85


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 179 SALQKHRQKENTQFTTTVENKRLQIILNNDIALILYRTKNRNHINTDGLFNGRSS 343
           S+LQKH   E   F+ ++EN        ND +L     K+  H   DG+ NG S+
Sbjct: 67  SSLQKHLNTETPSFSVSIENPSKPSAAFNDASL---GKKSTEH-QIDGIRNGSSN 117


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +2

Query: 107 SSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNNDIALILY 286
           S  E++ N FD +I  +  +H +   L  +      Q  +T +N  L +    DI   ++
Sbjct: 91  SENENIVNIFDLYIDQFRCLHIVMEFLDCNLY----QLISTRKNDPLTLEQVQDIMRQIF 146

Query: 287 RTKNRNHINTDGLFN 331
             K  NHI+T+G F+
Sbjct: 147 --KGLNHIHTNGFFH 159


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 68  SYVNMTVEKKQNTSSLEHLYNDFDQWISDYND 163
           SY N+ +E+K+  + L +   D D  ISD +D
Sbjct: 70  SYENVAMERKECANQLSYWGEDCDDDISDISD 101


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +2

Query: 68   SYVNMTVEKKQNTSSL----EHLYNDFDQWISDYNDI----HNIQSALQKHRQKENTQ 217
            S+ N+T E K+N S L    E  YN   Q +SD   +    + +  AL+K+    N++
Sbjct: 845  SFTNLTTESKRNASMLALPPESRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSLNSE 902


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 122 NVQGCSCFVSFQLSCSRTTN 63
           NV+GCS F S+Q  C+   N
Sbjct: 281 NVRGCSYFYSYQAVCTFLEN 300


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 381 LIYLRRKSLKPFLDERPLNKPS--VLI*FLFLVLYNINAISLFRMICRRLFSTVVVNCVF 208
           +IY+    L    + RPL  PS  V +  +FL+LY+   +S F M  +   +++    +F
Sbjct: 1   MIYINFYELYNIKNIRPLI-PSFHVCLLIMFLILYSQEILSFFFMCSKFSMNSLKFCVLF 59

Query: 207 SF 202
           SF
Sbjct: 60  SF 61


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 399 FFYNFELIYLRRKSLKPFLD 340
           FF +F   +++R S+KP LD
Sbjct: 94  FFPDFNFAWVKRNSVKPLLD 113


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 119 HLYNDFDQWISDYNDIHNIQSALQKHRQKE 208
           +L + +DQ+      I NI+S++Q  R+K+
Sbjct: 117 YLIDRYDQYRMTLKSIRNIESSVQPSREKK 146


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 116 EHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNN 265
           EH++ +   +   Y   H I+ A++K    E TQ +T  + +++    N+
Sbjct: 91  EHVHTETQSYNEPYMQRHRIEDAIEKKMTSE-TQPSTDEKGRKVSATENS 139


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 360 SLKPFLDERPLNKPSVLI*FLFLVLYNINAISL 262
           +L+ FL E  + KP+ +   +FL+L NI++I +
Sbjct: 92  TLQTFLAELSVRKPTDVNFTIFLLLGNIDSIDI 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,676
Number of Sequences: 5004
Number of extensions: 21266
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)