Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25h17
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 518 KRSAPPANWDKPLPEWMSKRDENTYLAL 601
           ++S PP ++ K +  WMS      +L+L
Sbjct: 264 QQSLPPVSYVKAIDVWMSSCSVFVFLSL 291


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 274 PLIL*LTFCSIGCINRLFMDFRFIF 200
           P+I+ L FC    I+  F D + +F
Sbjct: 21  PVIIQLPFCGPNVIDHYFRDLQPLF 45


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 410 YNNYHNLFSIGYN 372
           YNNY+N ++  YN
Sbjct: 94  YNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 410 YNNYHNLFSIGYN 372
           YNNY+N ++  YN
Sbjct: 94  YNNYNNNYNNNYN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,716
Number of Sequences: 438
Number of extensions: 3253
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)