Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25h07
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.4  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   5.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   5.5  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 395 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 264
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   LRECLQHRLLVLSSPHLTRTVHSHLKWRNAH 100
           LR  L+H LL   S  L + + S LKWRN H
Sbjct: 365 LRCALRHELL---SAGLQKAIDSLLKWRNRH 392


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 268 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFXRAIELT 417
           CD    L+    GSK+          K++  P K  +N+E  D  RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 277 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGXALPTAYSXPV 131
           LH + ED+ + G FL S A  R+C   +   + +      L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,720
Number of Sequences: 5004
Number of extensions: 36532
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)