Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25h06
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    56   6e-09
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    47   3e-06
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.73 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    29   0.73 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   3.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   5.2  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   9.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.0  

>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 29/90 (32%), Positives = 46/90 (51%)
 Frame = +2

Query: 356 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 535
           FP E  +  + K++LL++ +FAP   AF    +   EGK  R A  +L A++ P L+AN+
Sbjct: 94  FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANY 153

Query: 536 KWLTLFQVINLAFIPPMLRVLFMNIVGFGW 625
                FQ +N   +P   ++ F   V   W
Sbjct: 154 MVWPFFQTVNFWLMPLQYQMPFACTVAIFW 183


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = +2

Query: 332 FYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALY 511
           ++  +  +   E+    +  ++ L++ IFAPL   F    +   E K++          Y
Sbjct: 109 WFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFFLFMGITECKSYERLKSYFRKHY 168

Query: 512 LPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGW 625
            P L+AN+      Q+ N  F+P +L+V+F N V   W
Sbjct: 169 WPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVW 206


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +2

Query: 356 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 535
           F + +++   +  ++L    F  + +   ++S  +F  KT    L  L  ++L    +NW
Sbjct: 135 FSKPTSAITCSNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNW 194

Query: 536 KWLTLF 553
           KWL  F
Sbjct: 195 KWLAYF 200


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 247 RGWRINQT*SYSRIWFLRIIIWWYSSS 327
           R W  N T ++SRIW + I  +WY S+
Sbjct: 328 RSWFHNVT-NFSRIWVMHISAYWYYSA 353


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 320 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 472
           +P+     +++++   S SF P A K  +E  +   LM   S+Y    FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 441 ENACINGAKIKRSNNNFFASGNDADSS 361
           ENA  N      + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 274 SYSRIWFLRIIIWWY 318
           ++SRIW L I ++WY
Sbjct: 423 NFSRIWILHISVFWY 437


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 100 KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYYKL 210
           K+  +N   +K DN++ S+I    +FT    ESY+ L
Sbjct: 669 KYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFFL 705


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 193 ESYYKLRSGYSWQSSIT 243
           E YY +RS +SW+ S T
Sbjct: 276 EYYYYIRSSFSWEDSYT 292


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 487 SEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHC 612
           SEA   I+   L  Q+ +  +V   +F    S ++S+++E C
Sbjct: 327 SEANKLIIGNGLDPQVTLGPVVSKTQFEKIVSYIQSAINEGC 368


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 499 FCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHE 606
           + + +TS RS ++   I    KFSI T  +   +HE
Sbjct: 188 YVVRVTSFRSSIDFIVIESICKFSIETFRLTDRLHE 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,614
Number of Sequences: 5004
Number of extensions: 46605
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)