Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25h03
         (702 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens ...    31   5.3  
BC030525-1|AAH30525.1|   55|Homo sapiens Unknown (protein for MG...    30   7.0  
BC110828-1|AAI10829.1|  390|Homo sapiens RUNX1 protein protein.        30   9.2  

>AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46115 fis, clone TESTI2037085. ).
          Length = 148

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 593 RKKYGRRKTRSQKN*RPRKKRSLKKMTKRTQAKKGK 700
           +KK  ++K + +KN + +KK+  KK  K+ + KK K
Sbjct: 53  KKKKKKKKKKKKKNKKKKKKKKKKKKKKKRKKKKKK 88


>BC030525-1|AAH30525.1|   55|Homo sapiens Unknown (protein for
           MGC:40524) protein.
          Length = 55

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 593 RKKYGRRKTRSQKN*RPRKKRSLKKMTKRTQAKKGK 700
           +KK  +RK + +K  + +KK+  KK  KR + ++G+
Sbjct: 14  KKKKRKRKKKKKKKKKKKKKKKKKKKKKRRRRRRGR 49


>BC110828-1|AAI10829.1|  390|Homo sapiens RUNX1 protein protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 587 TSRKKYGRRKTRSQKN*RPRKKRSLKKMTKRTQAKKGK 700
           T +KK  ++K + +K  + +KK+  KK  K+ + KK K
Sbjct: 336 TCKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 373


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,912,618
Number of Sequences: 237096
Number of extensions: 532710
Number of successful extensions: 1467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)