Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25g09
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 330 RPLLPSSHSKLSMRDQLRDHEDRIARLEEELAQLKRQARDNSSHTWDKDHYLIYE 494
           RPLLPS  S+  + D L+   D+ A   ++L         +  HT+D+++   ++
Sbjct: 487 RPLLPSEESEYCIADVLQ-FPDKDALEPQKLILKGPNVESSLGHTYDRNYEFSFD 540


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 366 MRDQLRDHEDRIARLEEELAQLKRQ--ARDNSSHTWDKDHYLIY 491
           + ++L   +D +   E+E+A LKRQ   ++NSS  ++ +    Y
Sbjct: 297 LSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSY 340


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 111 NAIRIHHALATKAIDYTKKQHVFRLQTADQAEFLFQTSDSKELCSWVETI 260
           ++I + HA A K +    ++  F + T  + + L+Q + ++E+ SW+E I
Sbjct: 580 SSISLKHASADK-VRKQGRRFCFEVVTP-KLKRLYQATSAEEMDSWIEAI 627


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 KLSMRDQLRDHEDRIARLEEELAQLKRQARDNSSHT 464
           +L +  ++ +  D    + + L QLK++ RDN   T
Sbjct: 227 ELHLLQEIENASDSFPMIIDNLKQLKKETRDNVEET 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,015
Number of Sequences: 5004
Number of extensions: 28308
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)