Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25g07
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   2.1  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   2.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   3.7  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   3.7  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = -1

Query: 548 LCVREDRTDGYAGVAL-LVHNTIPFDHIPIANHSIDFSIIAVSINKICFVSVYI----PH 384
           +  RE+ T    GV L  + + + +D+   +    D   I    ++ CF  V +    P+
Sbjct: 579 ILARENTT--LLGVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPN 636

Query: 383 PTSSIFDEIEVIISQLPKPVLILG 312
           P  +IFD+++ II QL     + G
Sbjct: 637 PLMNIFDQLQSIIDQLDNATTLTG 660


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 275 NSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISAPDLS 150
           ++SY    IL   D + F +L  G+ +   Q   G + P+LS
Sbjct: 340 HNSYVNENILPSYDKHVFDVLWDGIPSENPQLQSGFTTPNLS 381


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 704 IMDPSTTLQWNCRSINSKKSDIYHLINLYKPVIIAI 597
           I D    LQWN RS     S +  L  LY  VII +
Sbjct: 434 IADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIIL 469


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 485 LYYEQVKLHQHSHLFYPLLHINIGKL*SYNLVLAK 589
           +YYE V+L  H   FY L +  + K  S N+V A+
Sbjct: 63  VYYEGVELLLHEQDFYDLCYQYLRKAASQNVVYAE 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,338
Number of Sequences: 5004
Number of extensions: 68781
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)