Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25g07
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 665 SINSKKSDIYHLINLYKPVIIAIQETWL 582
           S N ++   Y LI +Y P ++ +  +W+
Sbjct: 237 SFNLQRHTGYFLIQVYVPCVLIVVLSWV 264


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 493 IIQYLLTTFLLQTIALI 443
           I +YLL TF++ T++++
Sbjct: 296 IAKYLLFTFIMNTVSIL 312


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 249 YSCTIVTGIGATPSLVLCIKI 311
           Y C  V GIGA  S V+ I +
Sbjct: 753 YLCEAVNGIGAGLSAVIFISV 773


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 411 YFINTYCYYREINAMVCNRNVVKRYCIMNK 500
           +F NT+CY+R  NA    +N V+    ++K
Sbjct: 533 WFQNTFCYFRR-NAATW-KNAVRHNLSLHK 560


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 438 REINAMVCNRNVVKRYCIMNK*SYTSIAICSI 533
           RE N +VCN  V   Y I        I +C++
Sbjct: 801 REDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 692 STTLQWNCRSINS--KKSDIYHLINLYKPVIIAIQETWL 582
           + T +++C  ++   K+   Y+LI +Y P  + +  +W+
Sbjct: 223 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 692 STTLQWNCRSINS--KKSDIYHLINLYKPVIIAIQETWL 582
           + T +++C  ++   K+   Y+LI +Y P  + +  +W+
Sbjct: 223 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWV 261


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 140 PGLASLLTWKTLSSTYDS 87
           P +  +  W T+  TYDS
Sbjct: 152 PAMELVYAWSTIDYTYDS 169


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 144 HPWLSFLTDLENTFLY 97
           HPWL  L +  +T +Y
Sbjct: 544 HPWLPLLRNRLDTLIY 559


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 470 CGQKVLYYEQVKLHQHSH 523
           CG+   Y   +KLHQ +H
Sbjct: 237 CGKSFGYNHVLKLHQVAH 254


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 248 IFLHHSNWNWCYPKLGAV 301
           I LHH +W+  YP  G +
Sbjct: 205 INLHHWHWHLVYPFEGDI 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,587
Number of Sequences: 438
Number of extensions: 4604
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)