Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f22
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.5  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 83  KLYPQAIKLKAERKTKRPDELIKLDNWYQNEL 178
           +++  A  +KA     R  EL K+D W+ +++
Sbjct: 253 RMFVLAASIKAGYTIDRLYELTKIDKWFLHKM 284


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 308 PRAVMQETKKAFRKLPNIES 367
           PR++   TKK F K  +I++
Sbjct: 85  PRSMQDSTKKLFNKCKSIQN 104


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 560 YHRRFVCGLRN*GIPLLCNRCLPFRGSPGRIRQP 459
           +++ F+  +R  G+P   N      G+ GR+ QP
Sbjct: 78  HNKTFLAVIRYNGVPSSLNVVSDKTGNGGRLLQP 111


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 301 HFYQIRQLRVEFSSGLFPFHELDKFFVDHVRIFTPRFD 188
           H Y++ Q        ++P  +++ F VD +  +  +FD
Sbjct: 430 HSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQFD 467


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 301 HFYQIRQLRVEFSSGLFPFHELDKFFVDHVRIFTPRFD 188
           H Y++ Q        ++P  +++ F VD +  +  +FD
Sbjct: 430 HSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQFD 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,817
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)