Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25f21
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical p... 116 1e-26
U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical p... 116 1e-26
U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical p... 116 1e-26
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 30 1.2
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 4.9
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 28 6.5
Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical ... 27 8.6
>U39851-12|AAV58884.1| 137|Caenorhabditis elegans Hypothetical
protein C23G10.2c protein.
Length = 137
Score = 116 bits (279), Expect = 1e-26
Identities = 57/114 (50%), Positives = 75/114 (65%)
Frame = +3
Query: 120 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 299
+GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK
Sbjct: 19 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 78
Query: 300 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 461
TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++
Sbjct: 79 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 132
>U39851-11|AAV58883.1| 171|Caenorhabditis elegans Hypothetical
protein C23G10.2a protein.
Length = 171
Score = 116 bits (279), Expect = 1e-26
Identities = 57/114 (50%), Positives = 75/114 (65%)
Frame = +3
Query: 120 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 299
+GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK
Sbjct: 53 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 112
Query: 300 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 461
TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++
Sbjct: 113 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166
>U39851-10|AAM22035.1| 144|Caenorhabditis elegans Hypothetical
protein C23G10.2b protein.
Length = 144
Score = 116 bits (279), Expect = 1e-26
Identities = 57/114 (50%), Positives = 75/114 (65%)
Frame = +3
Query: 120 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 299
+GPYSQA+ A T+Y+SG LGLD + G QT Q+L NL VL+A GA +VVK
Sbjct: 26 IGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAAGADYGNVVK 85
Query: 300 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIALCGDL 461
TTVLL ++ DF N+VY +YF PAR Y+V+ LP G VEIEA+A+ G++
Sbjct: 86 TTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 139
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 455 SAKSDGLDLHSCSQR*STDFVCHSSRASFRKIFCIDFVESLEVVHASQQNSSFHD 291
S +DGL++ SQ +DF + ++ I D + +E+V A+ Q S++ D
Sbjct: 476 STNADGLEISWTSQPMVSDFDKKNLKSFINDIVAADTAKMVEIVVATSQQSAYSD 530
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/105 (20%), Positives = 42/105 (40%)
Frame = -1
Query: 487 GHGPASAMTKSPQRAMASISTAAPNGSRLTSYVIRAGQALGKYSA*TLLKVWKSSMLANK 308
G GP S S ++ ++++S+ A N + +G + A T ++
Sbjct: 568 GTGPKSQPKPSEKQLVSNLSSFASNTPSTVKFGFGSGASTTTTIASTTSNTIPFGSGSSV 627
Query: 307 TVVFTTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRI 173
+F APP ++ + A ASAP + +S + R+
Sbjct: 628 APLFGAPKTTAPPPTTVPATIPVAPTTIASAPVAAVTSSSNGTRV 672
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 136 KQF*RTRPYTFLEFSDWIEMHRWSAVVLKRRPVRLWT 246
KQF P + EF+D E H +V+K P LWT
Sbjct: 592 KQFDFPAPKSDFEFNDNGEFHEGDVIVVKHSP-NLWT 627
>Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 475 PAHALVHANNVTSFARIKFHKLFKKIKSFSKGNYLFP*FYHKFNII 612
P H + + F + F K+IKS +Y+F Y F+ I
Sbjct: 113 PEHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLYPHFSAI 158
>AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 475 PAHALVHANNVTSFARIKFHKLFKKIKSFSKGNYLFP*FYHKFNII 612
P H + + F + F K+IKS +Y+F Y F+ I
Sbjct: 113 PEHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLYPHFSAI 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,935
Number of Sequences: 27780
Number of extensions: 273338
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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