Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25f17
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 33 0.046
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.75
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 28 1.3
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.3
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 9.3
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 32.7 bits (71), Expect = 0.046
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 322 QLIFKGDSEESV-VLCTENKTYDVKEAETSNS 414
+++FK D ++ VLCT +KTY V++ SNS
Sbjct: 44 EIVFKSDFDKKASVLCTSDKTYAVRQVVQSNS 75
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 356 LYYVQKIRLMMSKKPKRQTACYYYPTYCSRHL 451
+Y I++ KP QT C TYC +HL
Sbjct: 96 IYMSALIKVCKKSKPHLQTHCIKRKTYCVKHL 127
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 398 ASLTS*VLFSVHSTTLSSESPLKINWFPASISFKRTSSSNINRKLSFSLF 249
A+L + S+ T+ ++SP +WFP + K+ N +L F ++
Sbjct: 550 ATLYKDISLSIMPATMEAKSPDMFSWFPIYMPIKKPMYVPENSQLEFHMW 599
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 224 DTSVSSDSCSFAVLMIFXTSSGVLVSFSPFSMIFPVL 114
++ SSDS S A + + TSSGV F+ + +L
Sbjct: 315 ESLASSDSISLAAIALMKTSSGVFAESELFTELINLL 351
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 464 SSKPVDAENNKSGSNSKLFDVSASLTS*VLFSVHSTTLSSESPLKINWFPASISFKRTSS 285
SSKP D N+ S +N+ + S +TS + ST ++S S L + S S TS+
Sbjct: 348 SSKPTDTTNSISFANTTPENTSTQITSPTAVN-SSTPITSSSVLNSSTPITSSSILNTST 406
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.3
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = -3
Query: 554 PSSESVDLFKLLLDLSNEVSESSI-ELF*IVSSKPVDAENNKSGSNSKLFDVSASLTS*V 378
P+S S D + +S+ +S SSI F VSS + + + S S++ L +S+S TS
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTFSSVSS--ILSSSTSSPSSTSL-SISSSSTS-- 600
Query: 377 LFSVHSTTLSSESPLKINWFPASISFKRTSSSNINRKLSFSLFCGGNLKI*DTSVSSDSC 198
+T SS S P+SIS +SSS I LS +L I +S+ S S
Sbjct: 601 ------STFSSASTSS----PSSISSSISSSSTI---LSSPTPSTSSLMISSSSIISGSS 647
Query: 197 S 195
S
Sbjct: 648 S 648
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 353 LSSESPLKINWFPASISFKRTSSSNINRKL-SFSLFCGGNLKI 228
+S++S K NWF A I SS+ R+ S +LFC N+K+
Sbjct: 840 ISTKSLEKANWFMALILDAMILSSSFARQFKSSNLFC-DNMKM 881
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.3
Identities = 33/111 (29%), Positives = 45/111 (40%)
Frame = -3
Query: 464 SSKPVDAENNKSGSNSKLFDVSASLTS*VLFSVHSTTLSSESPLKINWFPASISFKRTSS 285
SS + ++ S S +S+S +S FS ++ S S + P S S +SS
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSS 346
Query: 284 SNINRKLSFSLFCGGNLKI*DTSVSSDSCSFAVLMIFXTSSGVLVSFSPFS 132
S+ SFS +S SS S S V TSS L S S S
Sbjct: 347 SSSPSSSSFS-------STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS 390
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 112 YRTGKIMENGENETRTPEDVXKIIKTAKLHESELTEVSQ 228
+ +I+ N E+ + P+D +A L SEL E++Q
Sbjct: 97 HEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQ 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,613
Number of Sequences: 5004
Number of extensions: 35913
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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