Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f17
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0590 + 34932012-34932641                                         30   1.8  
05_01_0145 + 950312-950505,950998-951482,951532-951913,952127-95...    29   4.1  
02_04_0526 - 23682012-23682533,23682647-23682843,23683050-236830...    27   9.6  

>03_06_0590 + 34932012-34932641
          Length = 209

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -3

Query: 449 DAENNKSGSNSKLFDVSASLTS*VLFSVHST--TLSSESPLKINWFPA-SISFKRTS 288
           + E  K   N  +FDV   L+  V +++HS    + +  PLK+    A S++F+ T+
Sbjct: 142 EREYRKESDNGGVFDVEVDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETT 198


>05_01_0145 +
           950312-950505,950998-951482,951532-951913,952127-952229
          Length = 387

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 334 KGDSEESVVLCTENKTYDVKEAETSNS 414
           +G  EE  VLCT + TY +K    SNS
Sbjct: 69  RGRPEEEAVLCTPSATYAMKFVGNSNS 95


>02_04_0526 -
           23682012-23682533,23682647-23682843,23683050-23683098,
           23683272-23683429,23683558-23683852
          Length = 406

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 401 SASLTS*VLFSVHSTTLSSESPLKINWFPASISFKRTSSSNINRKLSFSLFCGGNL 234
           + +L +  L +   T   + SPL + WF   ++   +S   I  KLS SL   G +
Sbjct: 128 ATALNTTALAARRITVPHTNSPLDLRWFKEFMNSTTSSPQEIREKLSKSLVMLGEI 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,006
Number of Sequences: 37544
Number of extensions: 195467
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)