Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f17
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001531-1|AAH01531.1|  393|Homo sapiens defective in sister chr...    55   2e-07
BC001316-1|AAH01316.1|  393|Homo sapiens defective in sister chr...    55   2e-07
AY358866-1|AAQ89225.1|  393|Homo sapiens KRTR9337 protein.             55   2e-07
AK054585-1|BAB70767.1|  393|Homo sapiens protein ( Homo sapiens ...    55   2e-07

>BC001531-1|AAH01531.1|  393|Homo sapiens defective in sister
           chromatid cohesion homolog 1 (S. cerevisiae) protein.
          Length = 393

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +1

Query: 154 RTPEDVXKIIKTAKLHESELTEVSQILRFPP--QNKENXXXXXXXXXXXXXKEIEAGNQL 327
           RT ++V   ++ AKL+ +EL      L F P                    +++E G+ L
Sbjct: 3   RTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSL 62

Query: 328 IFKGDSEESVVLCTENKTYDVKEAETSN 411
           + +GD +E  VLC+++KTYD+K A+TSN
Sbjct: 63  VIRGDKDEQAVLCSKDKTYDLKIADTSN 90


>BC001316-1|AAH01316.1|  393|Homo sapiens defective in sister
           chromatid cohesion homolog 1 (S. cerevisiae) protein.
          Length = 393

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +1

Query: 154 RTPEDVXKIIKTAKLHESELTEVSQILRFPP--QNKENXXXXXXXXXXXXXKEIEAGNQL 327
           RT ++V   ++ AKL+ +EL      L F P                    +++E G+ L
Sbjct: 3   RTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSL 62

Query: 328 IFKGDSEESVVLCTENKTYDVKEAETSN 411
           + +GD +E  VLC+++KTYD+K A+TSN
Sbjct: 63  VIRGDKDEQAVLCSKDKTYDLKIADTSN 90


>AY358866-1|AAQ89225.1|  393|Homo sapiens KRTR9337 protein.
          Length = 393

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +1

Query: 154 RTPEDVXKIIKTAKLHESELTEVSQILRFPP--QNKENXXXXXXXXXXXXXKEIEAGNQL 327
           RT ++V   ++ AKL+ +EL      L F P                    +++E G+ L
Sbjct: 3   RTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSL 62

Query: 328 IFKGDSEESVVLCTENKTYDVKEAETSN 411
           + +GD +E  VLC+++KTYD+K A+TSN
Sbjct: 63  VIRGDKDEQAVLCSKDKTYDLKIADTSN 90


>AK054585-1|BAB70767.1|  393|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30023 fis, clone 3NB692001022, weakly similar to
           Putative C3HC4-type RING zinc finger protein. ).
          Length = 393

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +1

Query: 154 RTPEDVXKIIKTAKLHESELTEVSQILRFPP--QNKENXXXXXXXXXXXXXKEIEAGNQL 327
           RT ++V   ++ AKL+ +EL      L F P                    +++E G+ L
Sbjct: 3   RTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHSL 62

Query: 328 IFKGDSEESVVLCTENKTYDVKEAETSN 411
           + +GD +E  VLC+++KTYD+K A+TSN
Sbjct: 63  VIRGDKDEQAVLCSKDKTYDLKIADTSN 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,311,842
Number of Sequences: 237096
Number of extensions: 1082208
Number of successful extensions: 1805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)