Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f17
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    34   0.099
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      29   2.1  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    29   2.1  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    28   6.5  
Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 316 GNQLIFKGDSEESVVLCTENKTYDVKEAETSNS 414
           G  L  +GDS +  VLCT+N T+ +K  E++ +
Sbjct: 109 GQSLTIRGDSTDDAVLCTDNATFPMKIIESATT 141


>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = -3

Query: 335 LKINWFPASISFKRTSSSNINRKLSFSLFCGGNLKI*DTSVSSDSCSFA 189
           LKI+ FP  I   ++ S + ++ ++ S+   GN+++ D + ++D C ++
Sbjct: 273 LKIDDFP-EIELGKSISDDTDKTITLSISVNGNIQLIDPTDTNDDCMYS 320


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = -3

Query: 335 LKINWFPASISFKRTSSSNINRKLSFSLFCGGNLKI*DTSVSSDSCSFA 189
           LKI+ FP  I   ++ S + ++ ++ S+   GN+++ D + ++D C ++
Sbjct: 273 LKIDDFP-EIELGKSISDDTDKTITLSISVNGNIQLIDPTDTNDDCMYS 320


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 188 VLMIFXTSSGVLVSFSPFSMIFPVLYLSIS*PPKXS 81
           +  IF     + + F PFS +FP  +L IS  P  S
Sbjct: 256 IFSIFHRFPPIFMDFMPFSPLFPPSFLKISRKPPMS 291


>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -3

Query: 521 LLDLSNEVSESSIELF*IVSSKPVDAENNK-SGSNSKLFDVSASLTS*VLFSVHSTTLSS 345
           LLD+ NE +ESS +     SS P +   N  +  N ++   + +  S       STT   
Sbjct: 119 LLDMFNEENESSQDEKSPTSSSPTNGHTNGITNGNGEVAHENGAPVSAQKPQKSSTTFYE 178

Query: 344 ESPLKINWFPASISFKRTSSSNINRKLSFSLF 249
            S      F A ++F  T++  I+ +    L+
Sbjct: 179 FSQTDFECFEALVNFAYTANLEISSRKVAELY 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,791
Number of Sequences: 27780
Number of extensions: 190177
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)