Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f14
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    31   0.16 
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    30   0.28 
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    29   0.64 
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    28   1.5  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    27   2.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.9  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.9  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 24/115 (20%), Positives = 48/115 (41%)
 Frame = +1

Query: 79  YQIEGSWNVSDKTPSTWDDYTHTQPHRIKDHSNGDVACDSYNQYEKDIEMAEQLGLDFYR 258
           ++ + ++N+    P  WD   +T    I ++ + ++     + + + IE  E+  +D Y 
Sbjct: 106 FRADPNYNMRFTVPVLWDSKYNT----IVNNESAEIIRMFNDAFNEVIEDEEKRVVDLY- 160

Query: 259 FSISWPRLLPKGFRTRISADGRQYYDNLINGLLDRGIEPMVTLYHSDMPKIFQDL 423
                    P   RT+I      +YD + NG+   G       Y  ++  +FQ L
Sbjct: 161 ---------PSSLRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKNVRVVFQGL 206


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 525 IDRDPKFHSVSVQRESYVRVIGKPFCHFRIGPTSQILKYL 406
           +++DPKF    VQRESY +         ++  ++ +L+YL
Sbjct: 117 LEQDPKFQEFKVQRESYSQTASNDDVIEKLQTSTPLLQYL 156


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 463 RQTILPFQDWPNLPNLEISSAYLNGT 386
           R+ I  F DWP +P L I+  ++ G+
Sbjct: 83  REGIKEFSDWPTIPQLYINGEFVGGS 108


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 100 NVSDKTPSTWDDYTHTQPHRIKDHSN 177
           NV +  P T +    TQ H+ +DHSN
Sbjct: 3   NVQEHDPDTQEHNNETQNHKQEDHSN 28


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 463 RQTILPFQDWPNLPNLEISSAYLNG 389
           RQ +  F DWP  P L I   ++ G
Sbjct: 201 RQGLKVFSDWPTFPQLYIKGEFVGG 225


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 91   GSWNVSDKTPSTWDDYTHTQPH 156
            G  N++D  P+TW +Y H   H
Sbjct: 1694 GELNIND--PNTWKEYVHLDDH 1713


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 531 RLIDRDPKFHSVSVQRESYVRVIGKPFCHFRIGPTSQILKYLRHI 397
           R+ D D    +  +Q +    V+   F + +IG T  IL+YLRH+
Sbjct: 426 RINDLDCLGRTNVIQYQISRLVLKDIFFNLQIGVTFNILEYLRHL 470


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 321 SVRTDASAESFRQQSWPGYRKPVKIKSQ 238
           S ++    E+F +Q    Y  P+K+KSQ
Sbjct: 493 SEKSSDDEEAFEKQVTSSYSSPIKVKSQ 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,241
Number of Sequences: 5004
Number of extensions: 65710
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)