Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25f13
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 44 2e-05
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 33 0.029
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 33 0.050
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.066
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 26 5.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 7.6
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 25 7.6
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 7.6
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 7.6
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 25 10.0
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 44.0 bits (99), Expect = 2e-05
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 4 LMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELT 183
L +NL+YN LT + K F ++L L + GN L A + + + A + L+ +A
Sbjct: 832 LKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNEL----ANLSISSTAQVLLETLYANGN 887
Query: 184 SLWKVDKNHPLTVLINLLFLNVSHNRITE--IKQNELDNLNKLRTLDITN 327
L KN L+ +L FL++S N + +++ E +L KL L+ N
Sbjct: 888 RLSSFPKNEALSK--SLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLN 935
Score = 31.9 bits (69), Expect = 0.087
Identities = 27/83 (32%), Positives = 40/83 (48%)
Frame = +1
Query: 91 LQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITE 270
L GNP+ LS++ FV P + L + L + D L L LN+S+N +TE
Sbjct: 790 LSGNPVSSLSSQEFV-MPTVEELYLVDNRLGN----DCFTALEYFKCLKVLNLSYNYLTE 844
Query: 271 IKQNELDNLNKLRTLDITNNPLA 339
I N + L+ L ++ N LA
Sbjct: 845 IPSKFFQNFSDLKHLFVSGNELA 867
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 232 LLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 330
L+ LNVSHN ++ + ++ KL+ LDI+NN
Sbjct: 431 LISLNVSHNLSLDLPLDFMERCVKLKRLDISNN 463
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 33.5 bits (73), Expect = 0.029
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = +1
Query: 70 NELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNV 249
++L L LK + +F+ +++ LD+S ELT + + L L L LN+
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-----PYALGELPQLCSLNL 386
Query: 250 SHNRITEIKQNELDNLNKLRTLDITNNPLACSRDFENL 363
+ N+IT + +L+ L+ L ++ N L EN+
Sbjct: 387 ASNKITGCRTFYHISLSHLQILVLSRNHLTSLSGLENV 424
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 32.7 bits (71), Expect = 0.050
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Frame = +1
Query: 4 LMEINLAYNMLTTLDPK-LFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAEL 180
+ + L+ N TLD K +F L N+Q LK + I P + LD+SH +
Sbjct: 847 IRNLYLSNNTFVTLDCKHMFLGVRYLELANVQ---LKEVPKYIATSMPNLRVLDLSHNYI 903
Query: 181 TSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQ--NELDNLNKLRTLDITNNPL 336
+ ++ PL ++ L + NRI +++ + L NL +L LD+ NPL
Sbjct: 904 SD---IESLKPLQMIHRLYLVG---NRIKKMRNLCDILANLKQLNVLDLRMNPL 951
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 223 LINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPL 336
L+NL +L++S+N++ ++ L +L LR L + +N L
Sbjct: 667 LLNLQYLDISYNQLEDL--TGLSSLIHLRELKVDSNHL 702
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 32.3 bits (70), Expect = 0.066
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +1
Query: 358 NLMTWLNNHTVLPTGNSANVANMA-RDGKDDDATYSW--DFLTIKTCGTTVISHPVEPLS 528
N +T N+ L T + AN A ++ D + SW DFL++ T T+ + +
Sbjct: 34 NDLTAANSIVDLKTNSQHENANAAGKEYGDSGVSESWVLDFLSV-TGEKTISEFLAQKIW 92
Query: 529 AVSDEEIWERIDKDTEGNFDLKNTLDDGKIPDDTNAS 639
S+ ++ +D + +F++KN+ D + DT+AS
Sbjct: 93 KTSNGDLNVAVDMYFDESFNIKNSNPDSESQKDTDAS 129
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 328 NPLACSRDFENLMTWLNNHTVLPTGNSANVANMARDGKDDD 450
NPLA D + ++ +L+ H V TG V N ++DD
Sbjct: 332 NPLALGCDCKGVIHYLDAHFVNNTGEVETVKNAICIHEEDD 372
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 508 HPVEPLSAVSDEEIWERIDKDTEGNFDLKNTLDDGKIPDDTNASADS 648
H + A +D E E +D +EG + ++G DD S DS
Sbjct: 212 HSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGDS 258
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 244 NVSHNRITEIKQNELDNLNKLRTLDITNNPLACSRDFENLMTWLNNHTVLPTGNSANVAN 423
N + I + Q + L + D++N L+ + +++ N + PT +++VAN
Sbjct: 667 NTRGDYIVQRTQQSANPLTNIEPQDMSN--LSTDINASDVVADSTNSILYPTSTASSVAN 724
Query: 424 MARDGKDDDATYS 462
DD T++
Sbjct: 725 TIASDVDDFGTFN 737
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 530 ADNGSTGWEITVVPQVLIVRKSQL*VASSSFPSLAILATLAELP 399
+ NG G EI+ VPQ I R+ V + F S + A++ LP
Sbjct: 115 SSNGKLGTEISEVPQPPIPRQLGE-VTTLKFASQGVRASILRLP 157
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 244 NVSHNRITEIKQNELDNLNKLRTLDITN---NPLACSRDFENLMTWLNNHTV 390
+VSHN + EL N N T ITN + +++ L L+NH V
Sbjct: 448 SVSHNTYRQNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRV 499
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 448 DATYSWDFLTIKTCGTTVISHPVEPLSAVSDEEIW-ERIDKDT 573
DA Y + + TC + P+E +DEE++ + ID D+
Sbjct: 856 DAIYENLIIPLLTCILKLFEMPIEQAQTDADEELFMDEIDADS 898
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 636 SVGIIRNFTVI*GVLQIEITLSVLVDSFPNFFVRYSR 526
S GI+ NFTV+ L+ + L VD+ F +++ R
Sbjct: 147 SSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQFLR 183
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 470 KSQL*VASSSFPSLAILATLAELPVGNTVWLFSHVMRFSK 351
+S + V S+FPS+A ATL+ P L HV++ +K
Sbjct: 135 RSLVPVDKSAFPSIAEAATLSVNPC-TAYCLLQHVVQLNK 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,782
Number of Sequences: 5004
Number of extensions: 55257
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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