Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f13
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    54   2e-09
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.38 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.50 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.66 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 37/111 (33%), Positives = 59/111 (53%)
 Frame = +1

Query: 4   LMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELT 183
           L   N +YN L +L   LFA   +L +++L  N L+ L   IF     ++ L+++   L 
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLG 322

Query: 184 SLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPL 336
           S  +VD+   L  LI L+ LN+S+N +T I      +L  L+ LD+ NN +
Sbjct: 323 S-DRVDETTFLG-LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371



 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 33/117 (28%), Positives = 57/117 (48%)
 Frame = +1

Query: 1   KLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAEL 180
           +L+ +NL+YNMLT +D ++F     L  L+L+ N +  + +  F+    +  L++S  +L
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKL 395

Query: 181 TSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPLACSRD 351
            ++     N     L  L  L +S N I  I      N + L+ LD++ N L    D
Sbjct: 396 RTVGAQLFNG----LFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPD 448



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 26/86 (30%), Positives = 44/86 (51%)
 Frame = +1

Query: 73   ELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVS 252
            +  ++ L GN L+ L   +F+    M  L ++ + + S+    +N     L NL  L++ 
Sbjct: 795  DATEVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESI----QNRTFNGLNNLQILHLE 850

Query: 253  HNRITEIKQNELDNLNKLRTLDITNN 330
             NRI E+K  E + L+ LR L + NN
Sbjct: 851  DNRIRELKGFEFERLSHLRELYLQNN 876



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 23/60 (38%), Positives = 31/60 (51%)
 Frame = +1

Query: 157 LDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPL 336
           LD+S  E+T L    +N PL  L  L  L++  N I EI  + L  L  LRT + + N L
Sbjct: 217 LDLSRNEITRL---QENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273



 Score = 28.7 bits (61), Expect = 0.054
 Identities = 27/109 (24%), Positives = 52/109 (47%)
 Frame = +1

Query: 4   LMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELT 183
           L  +NLA N +  ++   F +N  L  + L GN L  ++  +F    +++ L++S   + 
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDING-VFTSIASLLLLNLSENHIE 562

Query: 184 SLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 330
             W  D      +  NL +L++  N I  +        +K++TLD ++N
Sbjct: 563 --W-FDY---AFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHN 605



 Score = 25.4 bits (53), Expect = 0.50
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
 Frame = +1

Query: 1   KLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMI-WLDMSHAE 177
           +L  I L  N L+ ++  +F     L  LNL  N ++      +   P  + WLD+    
Sbjct: 527 RLEAIRLDGNFLSDING-VFTSIASLLLLNLSENHIEWFD---YAFIPGNLKWLDIHGNF 582

Query: 178 LTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNN 330
           + SL    K     V      L+ SHNRITE+  + L   + +  L I NN
Sbjct: 583 IESLGNYYKIRDSKVKT----LDASHNRITEL--SPLSVPDSVELLFINNN 627


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 496  TVISHPVEPLSAVSDEEIWERIDKDTEGNFDLKNTLDDGKIPDDTNASADSKLIIDSTDE 675
            T+ S P +P      ++  ++  +      DL N      +P D  ++ DSKLI+D + +
Sbjct: 1442 TLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLY---AVPTDKKSACDSKLIVDHSSQ 1498


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = -2

Query: 380 LFSHVMRFSKSRLQANGLLVMSKVRSLFKLSNSFC 276
           LFS ++ F++    A  ++V++ +++L++  +SFC
Sbjct: 493 LFSDIVGFTEICSTATPMMVINMLQNLYEQFDSFC 527


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 663 INY*FAVSRSVGIIRNFTVI*GVLQIEITLSVL 565
           I Y F++SR  GI+    VI  V  + +TL+VL
Sbjct: 242 IVYEFSISRHYGILHATYVIPAVTMMLLTLTVL 274


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 205 FYLLSTKRLIQRDSCLAKSWPECGQKFPQK 116
           F++L+T  ++     L  +W  C +  PQK
Sbjct: 9   FFVLTTMLMMAIAVELPNNWRICDRSLPQK 38


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 582 ITLSVLVDSFPNFFVRYSR*WFNRMGN 502
           I L  +VDS+ N    Y++   N +GN
Sbjct: 337 IDLGYVVDSYGNHVKLYTKQGLNVLGN 363


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 582 ITLSVLVDSFPNFFVRYSR*WFNRMGN 502
           I L  +VDS+ N    Y++   N +GN
Sbjct: 337 IDLGYVVDSYGNHVKLYTKQGLNVLGN 363


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 400 GNSANVANMARDGKDDDATYSWDFL 474
           G+ A V   +R+G     TY W+FL
Sbjct: 443 GDGAAVKRKSREGS---TTYLWEFL 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,749
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)