Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25f11
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 92 6e-20
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 3e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 41 2e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 37 0.003
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.003
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.012
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 35 0.012
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 34 0.016
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 33 0.036
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 31 0.11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 30 0.26
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 28 1.0
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 28 1.0
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 4.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.5
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.7
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 92.3 bits (219), Expect = 6e-20
Identities = 44/66 (66%), Positives = 51/66 (77%)
Frame = +3
Query: 462 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 641
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 642 PIALSG 659
PIALSG
Sbjct: 76 PIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 43.6 bits (98), Expect = 3e-05
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = +3
Query: 363 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 536
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 537 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALS 656
FEE LK ELL GI+ ++KPS IQE ++P+ LS
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLS 150
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/92 (30%), Positives = 44/92 (47%)
Frame = +3
Query: 384 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 563
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 564 CLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
L + LL IF+KG++ P+PIQ +IP+ L G
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 516 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG 296
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 552 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
F +F LK ELL I + G+E PS +Q+ IP ++ G
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILG 88
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 546 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 641
+ FEE LK +LL GI+ G+E PS +Q +I
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAI 52
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 546 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
NEF L LL I G+ +P+P+Q+ SIPI SG
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG 206
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.3 bits (75), Expect = 0.016
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 552 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 641
F++ LK ELL GI+ G+E+PS IQ+ +I
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAI 50
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 33.1 bits (72), Expect = 0.036
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Frame = +3
Query: 462 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 611
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 612 KPSPIQEASIPIAL 653
+PS IQ A+IP+ L
Sbjct: 271 EPSSIQRAAIPVLL 284
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 552 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
FEE +L + + G+E P+PIQ+ + P+A+SG
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSG 159
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 552 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
F +F L L I + +EKP+ +Q +IP+AL G
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 534 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALS 656
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 561 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
F L E+L + + G+ KP PIQ IP A G
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIG 159
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 501 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
K + S +D +F + L + I E G+E + IQ+ SIP L+G
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 393 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 539
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 567 LKRELLMGIFEKGWEKPSPIQEASIPIALSG 659
L + + I G+EKP+ IQ +IP SG
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSG 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,595
Number of Sequences: 5004
Number of extensions: 37895
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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