Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25f07
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 34 0.12
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 32 0.48
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 29 2.6
04_01_0036 + 436592-437572 29 2.6
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 29 4.5
02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840... 29 4.5
06_01_1166 + 9931955-9933406 28 6.0
12_01_1062 - 10966940-10967140,10967314-10967413,10968069-109681... 28 7.9
>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = -3
Query: 487 NELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITD 308
NEL ++ F+L V +I +NI+ QR S + V+ N + G+ +++ I +
Sbjct: 895 NELKSEELESFLLVVDGANFSIPELNILMQRYSGACSWVNHANNIVGKLLERNDYDNIVE 954
Query: 307 DVLGALE 287
++ G L+
Sbjct: 955 ELTGILK 961
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 370 HKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 227
++L G GED++ LNWET LGA G+ H +H + +FVH
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 113 DILEEQLYNSIVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 286
DIL E LY S ++DY D ++L + + + N++ + ++NN+ + +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294
Query: 287 LQGSKDIVRDCFP 325
+ + +++ FP
Sbjct: 295 SKSAWQVIQCAFP 307
>04_01_0036 + 436592-437572
Length = 326
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 661 VFVVFSGLQVPLGSETIDAVDSEGHVVAVRVSTD 560
V +VF G +P+G+E +DAV S ++ V T+
Sbjct: 52 VVLVFGGGPIPVGAELLDAVPSLRCIITVSAGTN 85
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 582 TTWPSESTASIVSEPSGTCSPLNTTKTICST 674
+TWPS S + + + P SPL+ T S+
Sbjct: 221 STWPSTSPSPLAAPPGAASSPLDPTAAFLSS 251
>02_04_0125 -
19982330-19982538,19983507-19983633,19983978-19984053,
19984993-19985184,19985906-19986474
Length = 390
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/101 (22%), Positives = 48/101 (47%)
Frame = -3
Query: 616 TIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAE 437
T+D++ + G +AVRV++ Q + +++ + L + L Q+ +L D + + E
Sbjct: 274 TVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSLQQA-KLIKDGQTQMLKKETE 332
Query: 436 GKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 314
+ + R+S +V + N G D S +NW+ +
Sbjct: 333 RLKQL----SVRHRRSRSVTSCFEANSFGGGDPSAINWQML 369
>06_01_1166 + 9931955-9933406
Length = 483
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 655 VVFSGLQVPLGSETIDAVDSEGHVVAV 575
V F+GL+ PLGS D D+ VVAV
Sbjct: 99 VAFAGLRGPLGSWARDRADTHHRVVAV 125
>12_01_1062 -
10966940-10967140,10967314-10967413,10968069-10968132,
10968301-10968373,10968467-10968612,10969625-10969667,
10969712-10969902,10970706-10970892,10971225-10971384,
10971483-10971616,10972525-10972530
Length = 434
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = -3
Query: 652 VFSGLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLP--QSNEL 479
V G+ V L ++ DA +S VA V+ + +I+ T + + ++LV SN
Sbjct: 39 VHRGIHV-LSAKATDAYESARTKVANFVNAANSREIVFTRNATEA-INLVAYSWGMSNLK 96
Query: 478 PADFRACFVLTVAEGKSAIVAVNIITQRQSETVALV 371
D VLT+AE SAIV ++Q+ T+ V
Sbjct: 97 QGDE---IVLTIAEHHSAIVPWQFVSQKTGATLKYV 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,899
Number of Sequences: 37544
Number of extensions: 330626
Number of successful extensions: 1130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -