Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f01
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   5.5  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   7.3  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   9.7  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   9.7  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 357 YGLDKSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDE 494
           Y + K EI   +  +SEA +    R +   +PGG+     +   DE
Sbjct: 82  YVIPKHEIRNRIRLLSEASLISCLRWLLHRIPGGVITWSTYKLFDE 127


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 285 ARENVIHLARTPEEKGSEIGIESNYGLDKSEIAKNLSS 398
           A EN++    TP++   ++G  +++ +DK +  K  SS
Sbjct: 631 APENILLDGLTPKQSSEDVGDATSFHMDKLDKEKEKSS 668


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 201 PEHCLQYLEQYASKEIFAIG--LILGQMTDARENV 299
           P H  +++  YA K+IF +G   +  ++T  ++N+
Sbjct: 161 PVHIQEFIRPYAQKDIFCVGGTSLFWKLTPNKQNL 195


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 466 TNIPPGSILVTCRAWSAIHASDTLLKFFA 380
           T +PPG ILV       I A + L+K ++
Sbjct: 300 TKLPPGDILVFLTGQDEIEALEALIKSYS 328


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 538 VDRNLLKQLGSSKTSSSLVTNMP*TNIPPGSI 443
           +  ++LKQ    +  + LV   P  NIPP  I
Sbjct: 282 IKESILKQYWDFRVQAQLVATAPVRNIPPTGI 313


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 488 ASYKYALNKHSTREHSSYMSR 426
           AS++Y +N+ STR+   Y S+
Sbjct: 147 ASFRYPMNQRSTRKSQFYSSK 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,698
Number of Sequences: 5004
Number of extensions: 54401
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)