Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25f01
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579...    52   3e-07
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757...    33   0.27 
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523...    28   5.7  
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    28   7.6  
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    28   7.6  

>10_02_0143 +
           5795028-5795108,5795197-5795403,5795878-5795976,
           5796136-5796224,5797876-5797992,5798262-5798367,
           5798522-5798606,5798699-5798808,5799335-5799465,
           5799686-5799782,5800310-5800603
          Length = 471

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
 Frame = +3

Query: 180 MPRTVYSPEHCLQYLEQY--ASKEIFAIGLILGQMTDARENVI--HLARTPEEKGSEIGI 347
           M +TV   E  L+ LE+   AS     +GL++G+++ + +  +   L  TP         
Sbjct: 1   MVKTVVGEEAQLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60

Query: 348 ESNYGLDKSEIAKNLSSVSEA-------WIADHARHVTRMLPGGMFVQGIFVTSDEDVFE 506
                    + AK  SS + +       W+A+HAR V+RML GGM V GI++ + E  F+
Sbjct: 61  SLLRAAPNPKAAKAASSDASSSLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEASFK 120

Query: 507 DPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERLILHMSTSTKVLTCK 656
                +   + L+ + + +S    ++G     +ERL++H+S S +   C+
Sbjct: 121 -----ATSPAVLSQVLRAVSQVAPLYGT--GVDERLLIHISYSPRRWACR 163


>08_01_0009 +
           68825-68950,72571-72669,72841-72929,74971-75087,
           75747-75906,76419-76549,76810-76906,77584-77877
          Length = 370

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = +3

Query: 435 VTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKGLSINEYMFGNCPYSNERL 614
           V+RML GGM V GI++ + E  F+     +   + L+ + + +S    ++G     +ERL
Sbjct: 43  VSRMLLGGMTVIGIYIWASEASFK-----ATSPAVLSQVLRAVSQVAPLYGT--GVDERL 95

Query: 615 ILHMSTSTKVLTCK 656
           ++H+S S +   C+
Sbjct: 96  LIHISYSPRRWACR 109


>05_01_0585 -
           5237547-5237930,5237995-5238072,5238163-5238405,
           5238515-5238661,5238780-5238863,5238969-5239040,
           5239153-5239248,5239345-5239410,5239537-5239642,
           5239749-5239900,5240238-5240433,5240791-5240879
          Length = 570

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 222 LEQYASKEIFAIGLILGQMTDARENVIHLARTPEEKGSEIGIES 353
           L +  S++ FA GLI    T+ R+   H+A     K  E+G+ S
Sbjct: 502 LAEQVSEDNFARGLIFPPFTNIRKISAHIAAKVAAKAYELGLAS 545


>02_01_0699 -
           5220896-5221345,5221403-5221504,5221694-5222343,
           5222445-5222793,5223189-5223510,5223621-5224123,
           5224486-5224578,5224708-5224759,5224837-5225129,
           5225208-5225630,5225734-5226070,5226185-5226220,
           5226272-5226589,5227465-5228450
          Length = 1637

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 474 IFVTSDEDVFEDPNCFSKLRSTLNHIYKGLSIN 572
           +FV  D DV + PN F +L +   H++ GL +N
Sbjct: 419 VFVNYDCDV-DAPNIFERLLAAGMHLFSGLIVN 450


>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 279 TDARENVIHLARTPEEKGSEIGIESNYGLDKSEIAKNLSS 398
           TD  ++   + R PEE  +E G+E +  L +  + + +SS
Sbjct: 226 TDESQHETAVMRDPEELSAEQGLEDSGSLSRQSLGRTVSS 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,966
Number of Sequences: 37544
Number of extensions: 303116
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)