Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e23
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   3.2  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   5.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   5.7  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   7.5  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.9  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = +3

Query: 114 IDVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRI 293
           I  + +  ++ SE+   V  +     K+ + E E   L  + TN++     Y     KRI
Sbjct: 380 ISAEEMNQKYISEQTQLVEEALTKVMKEKYREKEN-NLELLETNLKTHHKDYKHALKKRI 438

Query: 294 SVLAEKVSAKYKESRKNKLKRTFVQA 371
           + L E+ +   KE    K+K+  + A
Sbjct: 439 TALEEEKNRLIKEIGPEKVKKAGILA 464


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 232 CASVTNSASGKSSLCSKRKL-RLTSHCSSDSCSVLNEST 119
           C++++N  +G+     K+   +L++ C S +CS+L ++T
Sbjct: 259 CSALSNGENGEDVADGKQFCQKLSTACGSIACSMLTKTT 297


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 255 LGCRYPPQTMKRI-SVLAEKVSAKYKESR--KNKLKRTFVQASDAAEQKAKRTF 407
           +GC Y   ++ +I S +   V+ + +  R  K +L+  FVQ S   EQ+  R+F
Sbjct: 815 MGCDYSSVSILQIVSQIEHFVNQQIQTIRSLKQELRHDFVQFSGKKEQELSRSF 868


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 264 RYPPQTMKRISVLAEKVSAKYKESRKNKLKRTFVQASDAAEQK 392
           R    +M+R S L EKV+A   E  K KL   F  ++D + QK
Sbjct: 422 RLQKDSMRRSSPLNEKVTAS-SERMKKKL-ALFASSTDTSMQK 462


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 26/96 (27%), Positives = 39/96 (40%)
 Frame = -1

Query: 395 SFLLGRIAGLHESSFQLILSALLVLGGHFLGQYRNAFHCLRWISAS*KFDIGIDLRQCH* 216
           SF+ G    + ES  Q   +A++     F  Q  +     RWI  +        +R C  
Sbjct: 503 SFITGNAKSISESFDQEAAAAIVARMALFKCQTEDEMSVTRWIDRN-------LIRLCQH 555

Query: 215 FSFWKIVFVF*KETTSNFPLFLRFVLRSQRIYVYRR 108
           F+ ++      KE  S+F L   F L  Q I+  RR
Sbjct: 556 FADYR------KEDPSSFRLLPNFTLYPQFIFHLRR 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,021
Number of Sequences: 5004
Number of extensions: 41807
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)