Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e21
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    29   2.1  
U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone...    29   2.8  
AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear recep...    29   2.8  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical ...    27   6.5  

>AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical
           protein F28B3.5b protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 256 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 393
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 256 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 393
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 16 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 RSDGNRDSYSAPAVGDCEATLRLRC 314
           R+  NR +YS     DC+ T+ +RC
Sbjct: 40  RTVSNRKTYSCQGNNDCDVTINIRC 64


>AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-16 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 RSDGNRDSYSAPAVGDCEATLRLRC 314
           R+  NR +YS     DC+ T+ +RC
Sbjct: 40  RTVSNRKTYSCQGNNDCDVTINIRC 64


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 246 RCGRDSQLPPEHIHLRQQRPQGGEEKE 166
           R G D +  P+H  LR +R +GG+ +E
Sbjct: 92  RAGSDDEAMPKHTILRYRRKKGGQWRE 118


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -3

Query: 275 RGRIAVTIPIAAGVTPSCRP---NTFICGNSGPRAAKKKKKCAFTG 147
           RGR    +P   G  P+C P   N   C N G      K+ C   G
Sbjct: 499 RGRCGRDVPPLEGEAPTCNPDDANAHCCSNGG-YCGNSKEHCECNG 543


>AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical
           protein M151.5 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 538 HRTFPEYNSSGTCTFLSSGTDRFVSNQRFP 449
           H   P + SSG CT   SGTD     +R P
Sbjct: 176 HDCSPFFLSSGFCTSKDSGTDALSGTKRAP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,174
Number of Sequences: 27780
Number of extensions: 229475
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)