Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25e19
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 32 0.26
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 32 0.35
08_01_0208 + 1662101-1662223,1663130-1663243,1663327-1663468,166... 29 3.3
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197... 29 3.3
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316... 28 4.3
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 28 4.3
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 28 5.7
07_01_0291 + 2113234-2113307,2113637-2113712,2113914-2114005,211... 27 7.5
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 27 7.5
04_01_0268 - 3585907-3588086,3590167-3590326 27 10.0
03_02_0642 + 10086400-10086505,10086675-10087014,10087072-100871... 27 10.0
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 158 SDDSWFAYSFDYARA--LMLSTQGFTVALFYCFMNTEVRH 271
+D S F YSFD A A LM+ + T A FY ++T+ RH
Sbjct: 144 ADSSGFTYSFDIANASKLMVGGERCTTAPFYKNIDTDHRH 183
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +3
Query: 330 GGELHTLRT------GLLDPERRVYG--SRYEDIWNEYGIELIEFLTKRT*CIYGD 473
GG HT T G + PE ++G S DI++ +G+ ++E +TKR C YGD
Sbjct: 510 GGHTHTKTTRIVGTYGYMAPEYAIHGNVSPKIDIFS-FGVLVLEIVTKRKNCSYGD 564
>08_01_0208 +
1662101-1662223,1663130-1663243,1663327-1663468,
1663496-1663610,1663936-1664077,1664216-1664313,
1664396-1664525,1664740-1664884,1665163-1665389
Length = 411
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 28 VGADYETPLGEHPRNRTIQEGY*SASCIDTIVG 126
+G+D E LGE PR + G S +C D +G
Sbjct: 250 IGSDPEGRLGEAPRPELREHGRISGACFDAALG 282
>06_01_0001 -
18456-18521,18692-18874,19046-19153,19337-19396,
19755-19937,20109-20291,20816-20998,21170-21352,
21524-21581,21878-21935,22586-22643,22938-22995,
23292-23349,23998-24007
Length = 482
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +2
Query: 32 VLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARALML 211
V+ K+ S L+ + K +L IP+L T+L CGPSD FA + + +
Sbjct: 345 VISRKISSVPPLQIQSL-KGESNVLCAIPIL-TTSLKTSCGPSDIRCFAETTAASWPMCR 402
Query: 212 STQGFTVALFYCFMNTEVRHAIRYHV 289
+ Q ++T++ +AI +V
Sbjct: 403 ARQPTLTTRLVDALDTDIVYAIHSNV 428
>06_03_0485 +
21330547-21330684,21331391-21331471,21331610-21331683,
21331767-21331842,21332014-21332081,21332803-21332926,
21333264-21333362,21333679-21333815,21334166-21334247,
21334595-21334657,21335272-21335319,21335452-21335514,
21335840-21335923,21336098-21336118
Length = 385
Score = 28.3 bits (60), Expect = 4.3
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +1
Query: 478 MWIWIDIIVCFYYFVYNLIKFLICF 552
+++W+ + CF++ N++ L+CF
Sbjct: 252 LYVWLCMFYCFFHLWLNILAELLCF 276
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 141 LCSADLVTTPGSRTHSTTREPSCYQHRDSQWPYSIAS 251
LC++DL TP S H+ P H+D WP +AS
Sbjct: 501 LCASDLTATPPSLRHTWRYRP---PHKD--WPAPVAS 532
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 315 SEEGEGGELHTLRTGLLDPERRVYG 389
+EEG G H L +GLLD ++G
Sbjct: 179 AEEGHAGAYHVLESGLLDDVSVIFG 203
>07_01_0291 +
2113234-2113307,2113637-2113712,2113914-2114005,
2114079-2114220,2114297-2114397,2114490-2114619,
2114775-2114919,2115034-2115275
Length = 333
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 28 VGADYETPLGEHPRNRTIQEGY*SASCIDTIVG 126
+G+D E LGE P+ + G S +C D +G
Sbjct: 167 IGSDPEGRLGEAPKPELREHGRISGACFDAALG 199
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 279 GTTLRDGRLAEISEEGEGGELHTLRTGLLD 368
G +RDG++ EI+ +GG L + LL+
Sbjct: 123 GNIIRDGKVIEIAPNSKGGPLQDVLRSLLE 152
>04_01_0268 - 3585907-3588086,3590167-3590326
Length = 779
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 158 SDDSWFAYSFDYARALMLSTQ 220
SDDSW Y + AR L +S++
Sbjct: 452 SDDSWMEYQYHDARGLAISSE 472
>03_02_0642 +
10086400-10086505,10086675-10087014,10087072-10087156,
10088679-10088764,10089154-10089331,10089425-10089624,
10089964-10090297
Length = 442
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 123 WVSLTCLCSADLVTTPGSRTHSTTREPSCY 212
W+S CL ++ + TPG+++ +R S Y
Sbjct: 233 WLSFVCLVNSAVPDTPGAKSMERSRTLSVY 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,034
Number of Sequences: 37544
Number of extensions: 245717
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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