Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e19
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   3.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   3.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.3  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 19  QDYVGADYETPLGEHPRNRTIQ 84
           Q Y  A  +TPL E P N+  Q
Sbjct: 62  QRYFTAFMDTPLNELPANKRFQ 83


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 19  QDYVGADYETPLGEHPRNRTIQ 84
           Q Y  A  +TPL E P N+  Q
Sbjct: 62  QRYFTAFMDTPLNELPANKRFQ 83


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 384 YGSRYEDIWNEYGI 425
           YG R+E++  +YGI
Sbjct: 57  YGLRFEEVSEKYGI 70


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 428 FYSIFIPDIFIP*AVYSPFWI 366
           F ++FIP I +  + +  FW+
Sbjct: 304 FTTVFIPGIILVTSSFITFWL 324


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 428 FYSIFIPDIFIP*AVYSPFWI 366
           F ++FIP I +  + +  FW+
Sbjct: 273 FTTVFIPGIILVTSSFITFWL 293


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 428 FYSIFIPDIFIP*AVYSPFWI 366
           F ++FIP I +  + +  FW+
Sbjct: 324 FTTVFIPGIILVTSSFITFWL 344


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 428 FYSIFIPDIFIP*AVYSPFWI 366
           F ++FIP I +  + +  FW+
Sbjct: 273 FTTVFIPGIILVTSSFITFWL 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,876
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)