Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e15
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   6.2  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    28   6.2  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   6.2  
Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 471 QFAVMDKVLCSTDNL*SEIKKKL--NQSIFTANSVICIVCIKFNKCVILNK 617
           + A   K+L  T+ + SE+  +L  N   +++ S+I IVC  FN+ +IL K
Sbjct: 260 KMAKSQKMLEETNQMISEMSIELEENGGKWSSASLITIVCDVFNELLILGK 310


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 471 QFAVMDKVLCSTDNL*SEIKKKL--NQSIFTANSVICIVCIKFNKCVILNK 617
           + A   K+L  T+ + SE+  +L  N   +++ S+I IVC  FN+ +IL K
Sbjct: 260 KMAKSQKMLEETNQMISEMSIELEENGGKWSSASLITIVCDVFNELLILGK 310


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 471 QFAVMDKVLCSTDNL*SEIKKKL--NQSIFTANSVICIVCIKFNKCVILNK 617
           + A   K+L  T+ + SE+  +L  N   +++ S+I IVC  FN+ +IL K
Sbjct: 260 KMAKSQKMLEETNQMISEMSIELEENGGKWSSASLITIVCDVFNELLILGK 310


>Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical
           protein F10G8.2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 494 HLVHHSKLRSELRTQKL*GASTYREATIHLVVSFKTSFLLGCMNRSRLFIFRKRGQGQL 318
           H+VH+   +  + T K   +ST     +HL+    T++L   + ++  F+  K G G++
Sbjct: 107 HVVHNFSSKLLVNTTKYSRSSTVMRFNLHLITRKSTNYLWR-LEKNANFVIVKTGIGKM 164


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 522 HFTNCL*NTTPCPSQQTEVRASNSEALRGFYLQRSYHTSRRELQ 391
           H  N + NT P P Q  +    N  ++  FY   S+  +R  L+
Sbjct: 27  HIDNLICNTYPTPIQLRKSPTRNETSINAFYQYSSFVDARNALR 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,057
Number of Sequences: 27780
Number of extensions: 233932
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)