Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e13
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...   110   2e-25
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   3.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   4.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   10.0 
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    25   10.0 

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score =  110 bits (265), Expect = 2e-25
 Identities = 61/143 (42%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +1

Query: 250 SEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG-KQCF 426
           +E D+S G YG++ + +S+     R YT + ++S K DGQTV +RAR+ TSR +G K CF
Sbjct: 67  NEIDYSAGKYGDLPLNRSTARP-GRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCF 125

Query: 427 AVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDV 606
             LRQ   T+Q L  VN+   ISKQMVK+ G+I+ ESIV VE  V ++   ++S T++D 
Sbjct: 126 FSLRQKYDTIQALAVVNKDT-ISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDA 184

Query: 607 ELVAHQIWTVSSARSQLPLQIED 675
           E+    I+ +S  +  LP  +ED
Sbjct: 185 EIHISSIYVISPIKKNLPFLVED 207


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +1

Query: 388 RLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVR 567
           R+Q +   G+Q   +L+     + L++   E++  + +  K TG I +  +V V  + + 
Sbjct: 35  RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94

Query: 568 TAAPVE 585
             AP++
Sbjct: 95  LIAPMD 100


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 215 SIRLHQLSHQRNQSLTSQKDF 277
           SIR+  LSHQR  ++  QK+F
Sbjct: 86  SIRIKSLSHQRKAAVELQKNF 106


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 641 LDTVHI**ATSSTSLIVHDSTGAAVLTTEASTSTI 537
           LDT+H    TSST  I+ DS      T +  TST+
Sbjct: 22  LDTLH----TSSTEQIIKDSENVVHTTLKLPTSTL 52


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 611 SSTSLIVHDSTGAAVLTTEASTSTIDSLVMLPV 513
           + T  +V ++TGAA   T  S  T DSL + P+
Sbjct: 542 AETDALVSENTGAASQKTSKSYKTNDSLKVPPL 574


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 581 SNRAQLRTW-NWWLIRYGRYRAPDPSFLC 664
           SNRA ++   N W + Y  +  P P FLC
Sbjct: 556 SNRAHVKLIDNIWTVIYFIFNVPFPVFLC 584


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 319 DRVYTDVENLSIKMDGQTV 375
           DR Y D+ N+S+  DG T+
Sbjct: 7   DRDYYDILNISVDADGDTI 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,715
Number of Sequences: 5004
Number of extensions: 40869
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)