Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25e13
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 75 4e-14
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 60 1e-09
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 31 0.84
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 3.4
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805 29 4.5
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 5.9
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460... 28 7.8
01_06_1269 + 35883062-35883173,35883331-35883893,35884128-358841... 28 7.8
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 75.4 bits (177), Expect = 4e-14
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Frame = +1
Query: 238 PSTESEPDFSEGLYGNMKMIQ-SSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG 414
P +++ F+ YG++ + + S RV+T++ L G++V +R Q R
Sbjct: 56 PQADADDPFAAN-YGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVLIRGAAQAIRPVS 114
Query: 415 KQ-CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESC 591
K+ F VLR++ STVQ ++ + +S QMV+F ++++ESIVDVE V P+++
Sbjct: 115 KKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESIVDVEGVVSLPKEPLKA- 173
Query: 592 TIKDVELVAHQIWTVSSARSQLPLQIED 675
T + VE+ +I+ ++ A LP+ +ED
Sbjct: 174 TTQQVEIQVRKIYCINRAIPTLPINLED 201
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = +1
Query: 328 YTDVENLSIKMDGQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLVSVNEQRKISKQ- 501
+ DV L + G+ V VR RA G++ F VLRQ SSTVQ +V
Sbjct: 42 WADVAALGPDVAGRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVVGGGGGGGGGGDA 101
Query: 502 -MVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIED 675
+ +F ++RES+VDV V PV T ++VE+ +++ +S A LP+ ++D
Sbjct: 102 GVARFAAGLSRESVVDVAGVVSLPREPVRGTTQQEVEIQVKKLYCISKATPNLPISVDD 160
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3
Query: 673 PRSAEEAGIWRSIPSISDEPPVP 605
PRS E+ + R++PS++ +PPVP
Sbjct: 612 PRSPSESWLSRTLPSVTSKPPVP 634
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 525 HERVDSRRGGFGREDG----RPSRIVHN*GRGTGGSSDMDGIERQIPASSADRG 674
HE+V+ R G + RPSR + N GRG+ S G + PA++A RG
Sbjct: 139 HEKVEDRLWGMPTKQAIGVVRPSRAIKNFGRGSMHGS---GATKDGPANTACRG 189
>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
Length = 310
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 364 RPF*YSNFQHQCKPCHDVHLTIGSFSYSHKVLLR 263
RP + F H C+ D HL I S +SHK+ R
Sbjct: 110 RPLTQAAFDHLCQATFD-HLNIVSIDFSHKLSFR 142
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 484 RKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVE 609
R + K+M++ + TR + +D+E + + A P+E C + ++E
Sbjct: 582 RALPKRMIQAIQHFTRLTYLDMEETGIVDAFPMEICCLVNLE 623
>08_01_0531 -
4604556-4604582,4604829-4604921,4605381-4605572,
4605800-4606390
Length = 300
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 543 RRGGFGREDGRPSRIVHN*GRGTGGSSDMDG 635
RRGG GR G GRG GG +M G
Sbjct: 94 RRGGGGRGGGGGGGAAGGGGRGGGGDEEMGG 124
>01_06_1269 +
35883062-35883173,35883331-35883893,35884128-35884196,
35884337-35884624
Length = 343
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +1
Query: 382 RARLQTSRAKGKQCFAVLRQTSSTVQLLVSV---NEQRKISKQMVKFTGNITRESIVDVE 552
R L + +G +AV S + ++ E++K+ K M++ + + S +
Sbjct: 202 RVHLYNNYTRGWGIYAVCASVESQIVSQCNIYEAGEKKKVFKYMIEQAADRDQSSTGFIR 261
Query: 553 ASVVRTAAPVESCTIKDVELVAHQIW 630
+ E CT +D E A ++W
Sbjct: 262 SEGDLFLNGAEECTAQDSEAAADELW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,432
Number of Sequences: 37544
Number of extensions: 291277
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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