Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e12
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    33   0.030
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    33   0.030
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    32   0.092
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    31   0.12 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.49 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    27   2.0  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    27   2.0  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    27   2.6  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   3.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.6  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.0  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.0  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.0  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   8.0  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 593 FVGSIIGGFLIGWVADRYGRLPAAVYSTLI 682
           +VG+I+G    GW +DR+GR    + +T+I
Sbjct: 125 YVGTIVGQLSFGWYSDRFGRKNGMITATII 154


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 527 ITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGWVADRYGRLPAAVYSTLIGCLGGIL 703
           I+S++  + +RG++Q     ++ +G  +GG L G +A R+G   A  +   +G L  IL
Sbjct: 143 ISSDIVSLRERGTWQGITNIVWGIGGSLGGPLGGLIAQRWGWRTAFHFQVPMGILSTIL 201


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 557 RGSYQATAQALFFVGSIIGGFLIGWVADRY 646
           RG+YQ      F +GS +GG + G+ AD+Y
Sbjct: 211 RGTYQGIINVFFAIGSSLGGPVGGYFADQY 240


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 596 VGSIIGGFLIGWVADRYGRLPAAVYSTLIGCLGGIL 703
           +G+++GG + G +AD +GR P    +++I  +G I+
Sbjct: 138 LGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIV 173


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 456  LGICPAINTSSQFAS*TWQCEYPNFVESSIGIANV 352
            LGIC  IN SS+F S  W+ +    + ++IG+ N+
Sbjct: 1018 LGICIGINQSSEFLSPIWKKKTYVCLCTTIGLCNI 1052


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 536 EMDWICD-RGSYQATAQALFFVGSIIGGFLIGWVADRYGR 652
           + +W C  + SY    Q+LF VG+  G  L+G ++D +GR
Sbjct: 117 QTNWHCSIQVSY--LVQSLFIVGNAFGPMLLGPMSDIFGR 154


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 204 IPNSPAAINSSSKFICLTAPSVGFSSSIRFSRSNLFSIFIVSMA 73
           IP+S   ++SSS  I  ++P    SSS   S S+L S +  S++
Sbjct: 671 IPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLS 714


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 231 PLRFSCSVFSSTIVKCSSLNP-LRTTGAGFLNW 326
           P R SC V ++ +V    L P L T G  F  W
Sbjct: 86  PFRMSCFVLTNLVVTAGMLQPNLGTAGTVFWQW 118


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 515 PYPTITSEMDWICDRGSYQATAQALFFVGSIIGGFLIGWV 634
           PY  I   +++I +  SY A ++ +  +G+  GG++I W+
Sbjct: 506 PYKDIELGVEYIKNHLSY-ADSEKMVALGASYGGYMINWI 544


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 416 ANWDEVLIAGQIPNSTWPTKACEHG 490
           A+W E++IAG I +  +P+++  +G
Sbjct: 221 ADWPELIIAGNITSQVYPSQSLYNG 245


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 126 SIRFSRSNLFSIFIVSMAISVLISINVIVTVVYSTI 19
           S++ +  N+FSI IVS   S+ +   V+   VY  I
Sbjct: 10  SVKRNVLNMFSIVIVSATYSISLDSTVLYPAVYHAI 45


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 667 NSCWQSTVPISYPTNQKSSN 608
           N  W STV +S P NQ++ N
Sbjct: 87  NDTWTSTVGLSVPENQEAMN 106


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 320 ELANLTDTERRTLAIPIDDSTKFGYSHCQVYDANWDEVLIAGQI-PNSTWPTKACEHGWE 496
           E+ ++ D ER   + P+ + T+F  S   + + NW  +     +  N  W        W+
Sbjct: 53  EVYHMKD-ERLFASCPLPEKTRFSCSPIYIKEGNWHYIWTCTSLKSNGEWKILL----WK 107

Query: 497 FNKTE 511
           FN  E
Sbjct: 108 FNDLE 112


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 446 VQLLIPHPSSHHRPGNVNIRI 384
           VQ+++  PSS++ PGN+   +
Sbjct: 67  VQVMLAKPSSNYEPGNITAAV 87


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 189 AAINSSSKFICLTAPSVGFSSSIRFSRSNLFSIFIVS 79
           A  +S +  +CL   S+ F++++ F+R+  F+  I S
Sbjct: 381 ADTSSITSPLCLNTSSIVFNATVNFTRNGKFNTSIFS 417


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 68  EMAMDTMKIENKFDRE-KRIELEKPTEGAVKQINFDELLIAAGEFGIYQILLFFATSPFF 244
           ++ MDTM+ EN+ D + ++   +K TE   K+   ++L   A     Y ++   A     
Sbjct: 60  DVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTASFYDVVPTLAIPMAT 119

Query: 245 LFGVFVYYSQM 277
               F + S +
Sbjct: 120 SINAFAFTSDL 130


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 494 EFNKTEIPYPTITSEMDWICDRGSYQA 574
           EF++ EI    +T+E + IC  GS++A
Sbjct: 53  EFSRHEIEIYNLTAEGENICANGSHEA 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,539
Number of Sequences: 5004
Number of extensions: 68033
Number of successful extensions: 220
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)